invemichele / masterclass-22-03Links
Repository of the data for PLUMED Masterclass 22.3
☆14Updated last year
Alternatives and similar repositories for masterclass-22-03
Users that are interested in masterclass-22-03 are comparing it to the libraries listed below
Sorting:
- Rethinking Metadynamics: From Bias Potentials to Probability Distributions☆12Updated last year
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- ☆71Updated 7 months ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Martini 3 small-molecule database☆62Updated 11 months ago
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆19Updated last year
- Python package for efficient analysis of HILLS files generated by Plumed metadynamics simulations. Inspired by the Metadynminer package f…☆18Updated 9 months ago
- Density based object completion over PBC.☆30Updated 7 months ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆35Updated 3 years ago
- Implicit Solvent Approach Based on Generalised Born and Transferable Graph Neural Networks for Molecular Dynamics Simulations☆44Updated 3 months ago
- ☆41Updated 3 weeks ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- MLP training for molecular systems☆49Updated this week
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆15Updated 3 years ago
- Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling☆41Updated 2 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated last week
- ☆10Updated 5 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆22Updated 10 years ago
- ☆22Updated last month
- Automatic Mutual Information Noise Omission☆15Updated 9 months ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Graph-Based Force Fields Model to parameterize Force Fields by Graph Attention Networks☆9Updated last year
- Bayesian Multistate Bennett Acceptance Ratio Method☆14Updated last week
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- ☆65Updated last week
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- Robust Equilibration Detection☆23Updated 3 months ago
- OpenMM plugin to interface with PLUMED☆68Updated 5 months ago