invemichele / masterclass-22-03Links
Repository of the data for PLUMED Masterclass 22.3
☆14Updated last year
Alternatives and similar repositories for masterclass-22-03
Users that are interested in masterclass-22-03 are comparing it to the libraries listed below
Sorting:
- Rethinking Metadynamics: From Bias Potentials to Probability Distributions☆13Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- ☆10Updated 6 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 3 years ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆26Updated 4 months ago
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆20Updated last year
- Python package for efficient analysis of HILLS files generated by Plumed metadynamics simulations. Inspired by the Metadynminer package f…☆19Updated last year
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆15Updated 3 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆39Updated 4 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated 3 weeks ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆44Updated 5 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- MLP training for molecular systems☆54Updated 2 weeks ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- ☆76Updated 11 months ago
- ☆42Updated 2 months ago
- Martini 3 small molecule database☆68Updated last month
- Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling☆42Updated 2 years ago
- Robust Equilibration Detection☆26Updated 2 months ago
- ☆65Updated 3 months ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- Density based object completion over PBC.☆30Updated 11 months ago
- Automatic MARTINI parametrization of small organic molecules☆70Updated 5 months ago
- Different run and analysis scripts as described in the research guides.☆13Updated 3 years ago
- ☆22Updated 5 months ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 4 years ago