icomse / 3rd_workshop_advanced_sampling
Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling
☆38Updated 2 years ago
Alternatives and similar repositories for 3rd_workshop_advanced_sampling:
Users that are interested in 3rd_workshop_advanced_sampling are comparing it to the libraries listed below
- Rethinking Metadynamics: From Bias Potentials to Probability Distributions☆10Updated last year
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆18Updated 11 months ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Partial Charge assignment for Molecular Dynamics☆19Updated 2 months ago
- Automated calculation of cavity in molecular cages☆19Updated last month
- Robust Equilibration Detection☆21Updated last week
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆45Updated 4 years ago
- Repository of the data for PLUMED Masterclass 22.3☆13Updated 9 months ago
- MLP training for molecular systems☆46Updated last week
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 2 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- ☆11Updated last year
- A python class for building a ZMatrix from a RDKit molecule. We can also do coordinate transformations between ZMatrix and Cartesian spac…☆14Updated last year
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- Collective variables by artificial neural networks☆9Updated 3 years ago
- Automatic Mutual Information Noise Omission☆15Updated 6 months ago
- tmQM dataset files☆53Updated last month
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆43Updated 5 years ago
- ☆63Updated 4 months ago
- A comprehensive tool for analyzing liquid solvation structure.☆50Updated 9 months ago
- ☆27Updated 3 years ago
- MACE-OFF23 models☆31Updated 3 months ago
- Repository for material from the 2020 MC/MD Summer Workshop☆13Updated 9 months ago
- ☆12Updated 3 months ago
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆70Updated this week
- A python package for performing GROMACS simulation ensembles☆13Updated this week
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 8 months ago
- PSP is a python toolkit for predicting atomic-level structural models for a range of polymer geometries.☆35Updated 10 months ago