bioexcel / gromacs-2022-cp2k-tutorialLinks
Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
☆40Updated 4 years ago
Alternatives and similar repositories for gromacs-2022-cp2k-tutorial
Users that are interested in gromacs-2022-cp2k-tutorial are comparing it to the libraries listed below
Sorting:
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Martini 3 small molecule database☆68Updated 2 months ago
- OpenMM plugin to interface with PLUMED☆71Updated last month
- ☆65Updated 4 months ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated this week
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Density based object completion over PBC.☆30Updated 11 months ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- Robust Equilibration Detection☆26Updated 2 months ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 5 months ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆71Updated last week
- Random Acceleration Molecular Dynamics in GROMACS☆40Updated last year
- Automatic MARTINI parametrization of small organic molecules☆70Updated 6 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated last week
- The pDynamo molecular modeling and simulation program☆42Updated last week
- ☆42Updated 2 months ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 3 years ago
- GridMAT-MD membrane analysis program☆25Updated 7 years ago
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆34Updated last week
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆94Updated this week
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- ☆22Updated 5 months ago
- MDANCE: O(N) clustering for molecular dynamics. Process 1.5M frames in 40min. 8 specialized algorithms.☆95Updated last week
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆23Updated last year
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- ☆39Updated last year