bioexcel / gromacs-2022-cp2k-tutorialLinks
Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
☆37Updated 3 years ago
Alternatives and similar repositories for gromacs-2022-cp2k-tutorial
Users that are interested in gromacs-2022-cp2k-tutorial are comparing it to the libraries listed below
Sorting:
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆39Updated last year
- ☆65Updated 2 months ago
- Martini 3 small molecule database☆65Updated last month
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated 2 years ago
- Density based object completion over PBC.☆30Updated 9 months ago
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆15Updated 3 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆34Updated last year
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆67Updated this week
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆84Updated 2 months ago
- A collections of scripts for working molecular dynamics simulations☆44Updated 2 months ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- ☆39Updated last year
- ☆56Updated 2 years ago
- ☆22Updated 3 months ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆51Updated 6 months ago
- The public versio☆64Updated 2 years ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆67Updated 2 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- ☆39Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- OpenMM plugin to interface with PLUMED☆68Updated 7 months ago
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆30Updated 3 years ago
- GridMAT-MD membrane analysis program☆25Updated 7 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- Analysis of non-covalent interactions in MD trajectories☆63Updated 9 months ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆23Updated last year
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 5 years ago