bioexcel / gromacs-2022-cp2k-tutorialLinks
Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
☆41Updated 4 years ago
Alternatives and similar repositories for gromacs-2022-cp2k-tutorial
Users that are interested in gromacs-2022-cp2k-tutorial are comparing it to the libraries listed below
Sorting:
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- ☆65Updated 5 months ago
- OpenMM plugin to interface with PLUMED☆72Updated last month
- Random Acceleration Molecular Dynamics in GROMACS☆41Updated last year
- Martini 3 small molecule database☆68Updated 2 months ago
- ☆40Updated last year
- Temperature generator for Replica Exchange MD simulations☆29Updated 3 years ago
- Density based object completion over PBC.☆30Updated last year
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated this week
- ☆22Updated 6 months ago
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆34Updated last month
- Robust Equilibration Detection☆26Updated 3 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆71Updated 3 weeks ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆35Updated 2 years ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆24Updated 6 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆39Updated 2 years ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 6 months ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆23Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated last month
- Standalone charge assignment from Espaloma framework.☆45Updated 2 months ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 3 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- MDANCE: O(N) clustering for molecular dynamics. Process 1.5M frames in 40min. 8 specialized algorithms.☆96Updated last month
- Automatic MARTINI parametrization of small organic molecules☆71Updated 6 months ago
- The pDynamo molecular modeling and simulation program☆42Updated last month
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆63Updated last year