bioexcel / gromacs-2022-cp2k-tutorial
Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
☆33Updated 3 years ago
Alternatives and similar repositories for gromacs-2022-cp2k-tutorial:
Users that are interested in gromacs-2022-cp2k-tutorial are comparing it to the libraries listed below
- Random Acceleration Molecular Dynamics in GROMACS☆34Updated 7 months ago
- Martini 3 small-molecule database☆57Updated 5 months ago
- ☆64Updated last year
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆43Updated 4 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated last year
- ☆39Updated 7 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆30Updated last year
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆57Updated last year
- Density based object completion over PBC.☆27Updated 2 months ago
- Temperature generator for Replica Exchange MD simulations☆27Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆75Updated 8 months ago
- Workshop teaching QMMM using Amber☆59Updated 2 years ago
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆13Updated 3 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆64Updated last year
- ☆61Updated 2 months ago
- The Free Energy Landscape Analysis tool offers a comprehensive suite for analyzing and visualizing the free energy landscape derived from…☆19Updated this week
- ☆52Updated last year
- Computational Chemistry Workflows☆54Updated 2 years ago
- Trusted force field files for gromacs☆44Updated 3 months ago
- Analysis of non-covalent interactions in MD trajectories☆51Updated last month
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- GridMAT-MD membrane analysis program☆24Updated 6 years ago
- Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents☆28Updated 2 years ago
- Automatic MARTINI parametrization of small organic molecules☆64Updated 2 months ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆21Updated 5 years ago
- Different run and analysis scripts as described in the research guides.☆12Updated 2 years ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- OpenMM plugin to interface with PLUMED☆65Updated 3 months ago
- Example scripts using the CSD Python API☆65Updated last month
- Accurate prediction of protein pKa with representation learning☆42Updated this week