guiwitz / PyImageCourse_beginner
Course to learn basics of Python for image processing using Jupyter Notebooks
☆29Updated 6 months ago
Alternatives and similar repositories for PyImageCourse_beginner:
Users that are interested in PyImageCourse_beginner are comparing it to the libraries listed below
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆201Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆135Updated 4 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆130Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆70Updated 2 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Lectures for a napari training course☆50Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Materials for a Python Beginner's Course. First given at the Royal Society of Biology. Designed and delivered by Chas Nelson and Mikolaj …☆43Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆27Updated 2 months ago
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Updated 3 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆145Updated this week
- A napari plugin for clustering objects according to their properties.☆82Updated this week
- Course material for fundamentals in digital image processing☆20Updated 5 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆77Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- ☆16Updated 5 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆142Updated this week
- ExTrack MLE for diffusive noisy single-particle tracks☆12Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 4 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆74Updated 3 weeks ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆57Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated this week