A universal infrastructure layer for generative biology
☆109Jul 31, 2026Updated this week
Alternatives and similar repositories for proto-tools
Users that are interested in proto-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-level programming language for generative biology☆176Updated this week
- Python playground for cell-type-specific biology☆14Jul 10, 2026Updated 3 weeks ago
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 3 months ago
- AlphaGenome PyTorch port☆153Jul 25, 2026Updated last week
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Humanness of de-novo designed proteins☆47May 19, 2025Updated last year
- Profluent-E1 family of Protein Encoder Models☆114Mar 11, 2026Updated 4 months ago
- ☆16Sep 29, 2025Updated 10 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆41Mar 22, 2026Updated 4 months ago
- composite-objective protein design☆351Updated this week
- our in-house version of ProteinMPNN☆40Feb 12, 2026Updated 5 months ago
- protein folding app running on modal☆39May 30, 2026Updated 2 months ago
- [ICLR 2026] Official code for PairFlow: Closed-Form Source-Target Coupling for Few-Step Generation in Discrete Flow Models☆17Jul 3, 2026Updated last month
- ☆28Dec 19, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated 2 years ago
- Protein Engineering via Exploration of an Energy Landscape☆141Updated this week
- Fast indexing and search of discontinuous motifs in protein structures☆208Jul 10, 2026Updated 3 weeks ago
- An Open-Source web application to plan and document cloning and genome engineering☆54Jun 5, 2026Updated last month
- ☆143Jun 16, 2026Updated last month
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆407Jul 16, 2026Updated 2 weeks ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆274Apr 24, 2026Updated 3 months ago
- ☆26Jun 9, 2026Updated last month
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆23Mar 24, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bayesian Optimization for protein design and mining☆26Jul 2, 2026Updated last month
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,016Updated this week
- Neural networks to model BCR affinity maturation☆17May 11, 2026Updated 2 months ago
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."☆42Nov 18, 2025Updated 8 months ago
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆121May 10, 2026Updated 2 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 4 months ago
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆15Feb 26, 2025Updated last year
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- ☆2,885Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆859Updated this week
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 5 months ago
- Web-based dashboard for managing multiple Claude Code sessions across local and remote machines☆17Apr 7, 2026Updated 3 months ago
- JAX/Equinox translation of ESMFold2☆18May 29, 2026Updated 2 months ago
- ☆93Feb 11, 2026Updated 5 months ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 4 months ago
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Updated this week