A universal infrastructure layer for generative biology
☆136Oct 21, 2026Updated this week
Alternatives and similar repositories for proto-tools
Users that are interested in proto-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-level programming language for generative biology☆211Updated this week
- Miniprotein and antibody design pipeline for ESMFold2☆46Sep 23, 2026Updated last month
- Python playground for cell-type-specific biology☆14Aug 25, 2026Updated last month
- Multi-target protein binder design for specificity and cross-reactivity.☆20Sep 10, 2026Updated last month
- Protocol to redesign enzyme sequences for stability and expression followed in Krasnow et. al. 2025 (). Developed using ProteinMPNN (Daup…☆21May 11, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Humanness of de-novo designed proteins☆48May 19, 2025Updated last year
- ☆366Updated this week
- AlphaGenome PyTorch port☆163Sep 15, 2026Updated last month
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆21Oct 13, 2026Updated last week
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 7 months ago
- De novo Design of Macrocyclic Molecular Glues☆33Oct 14, 2026Updated last week
- ☆89Sep 30, 2026Updated 3 weeks ago
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- Aligning protein generative models with experimental fitness☆154Mar 12, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single cell manifold generator (SCMG)☆14May 21, 2026Updated 5 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆462Updated this week
- ☆15Feb 23, 2026Updated 8 months ago
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆16May 26, 2026Updated 4 months ago
- Protein Engineering via Exploration of an Energy Landscape☆148Updated this week
- ☆16Sep 29, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆56Jun 22, 2026Updated 4 months ago
- Accelerating Open-Source Binding Affinity Predictions☆199Aug 22, 2026Updated 2 months ago
- Tools developed in Python and Perl to support TCDB's functionality and research.☆12Aug 19, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."☆45Nov 18, 2025Updated 11 months ago
- composite-objective protein design☆379Oct 6, 2026Updated 2 weeks ago
- Property guidance for protein sequence generative models with ProteinGuide☆31Jun 3, 2026Updated 4 months ago
- ☆2,998Updated this week
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,083Sep 21, 2026Updated last month
- Easy to use suite for designing a wide range of protein binder modalities.☆450Updated this week
- GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins☆13Nov 28, 2022Updated 3 years ago
- our in-house version of ProteinMPNN☆41Feb 12, 2026Updated 8 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆300Apr 24, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- protein folding app running on modal☆39May 30, 2026Updated 4 months ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆47Mar 22, 2026Updated 7 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 6 months ago
- ☆97Feb 11, 2026Updated 8 months ago
- 🔎 Fast, local search across the CS research literature, with an expressive query language, an interactive TUI, and scriptable output.☆29Sep 18, 2026Updated last month
- ☆18Oct 5, 2024Updated 2 years ago