ethanzhao9 / ImageJ-Tutorial

Related projects ⓘ

Alternatives and complementary repositories for ImageJ-Tutorial

• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆53Updated 2 years ago
• TristaZeng / ZS-DeconvNet
  ☆54Updated 4 months ago
• DanuserLab / u-track
  Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …
  ☆45Updated 2 weeks ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆86Updated this week
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆127Updated 3 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆133Updated this week
• MontpellierRessourcesImagerie / imagej_macros_and_scripts
  ImageJ macros and scripts written at the imaging facility MRI
  ☆32Updated last week
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆84Updated 3 weeks ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆125Updated 2 months ago
• lens-biophotonics / ZetaStitcher
  ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
  ☆39Updated 2 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆70Updated this week
• fiji / Trainable_Segmentation
  Fiji library to perform image segmentation based on the Weka learning schemes
  ☆112Updated last month
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆141Updated last month
• rharkes / Fast_Tiff_Write
  A fast multi-image tiff writer for Matlab
  ☆18Updated 5 months ago
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆285Updated last month
• ZhuangLab / storm-analysis
  STORM movie analysis code
  ☆116Updated 8 months ago
• spreka / annotatorj
  AnnotatorJ: ImageJ plugin for object annotation in 2D
  ☆23Updated 3 years ago
• EliasNehme / Deep-STORM
  Official implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"
  ☆51Updated 4 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆76Updated 9 months ago
• Ajaxels / MIB2
  Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…
  ☆27Updated last month
• zitmen / thunderstorm
  ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
  ☆95Updated 6 years ago
• imagej / pyimagej
  Use ImageJ from Python
  ☆473Updated 3 weeks ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆101Updated 2 weeks ago
• ND-HowardGroup / Instant-Image-Denoising
  License & Copyright © 2019 Varun Mannam, University of Notre Dame Licensed under the GPL.
  ☆28Updated 2 years ago
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆24Updated 2 years ago
• jono-m / OrganoID
  ☆24Updated 11 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆27Updated 2 years ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆52Updated 4 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆126Updated last week
• AiviaCommunity / 3D-RCAN
  Three-dimensional residual channel attention networks
  ☆50Updated 2 years ago