emilydolson / phylotrackpy
Python phylogeny tracker for in silico evolution experiments
☆10Updated 2 months ago
Alternatives and similar repositories for phylotrackpy:
Users that are interested in phylotrackpy are comparing it to the libraries listed below
- Repository to host data standards for the ALIFE community.☆15Updated last year
- Symbulation is a software model of symbiosis built using Empirical☆13Updated 3 weeks ago
- DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality☆30Updated 2 years ago
- ☆10Updated 9 months ago
- Dataset and scripts to create a Phylogeny of Plant Emojis☆16Updated last year
- Modular Agent Based Evolution Framework☆80Updated 6 months ago
- EC-KitY: A scikit-learn-compatible Python tool kit for doing evolutionary computation.☆93Updated last month
- A javascript library for building, exploring, and sharing spatially structured models of biological systems☆14Updated this week
- python-wrapped version of ellen, a linear genetic programming system for symbolic regression and classification.☆54Updated 2 years ago
- Lecture slides, exercises, assessments, exam questions for teachers and students of Artificial Life.☆40Updated 2 years ago
- ☆15Updated 7 months ago
- egtplot: A python package for 3-Strategy Evolutionary Games☆49Updated 6 years ago
- Lightweight header-only C++ library for loading and traversing trees☆11Updated 2 months ago
- Tiny Genetic Programming in Python.☆99Updated 2 years ago
- python package to read and write the Newick format☆47Updated 2 weeks ago
- TreeSwift: Fast tree module for Python 3☆79Updated 3 months ago
- Automata on arbitrary networks, with Python☆55Updated last year
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆44Updated 3 months ago
- A simplified python interface to COPASI.☆20Updated 3 weeks ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- Push Genetic Programming in Python.☆75Updated last year
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 4 months ago
- Python implementation of block decomposition method for approximating algorithmic complexity☆35Updated 7 months ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆27Updated 3 weeks ago
- ☆18Updated 2 weeks ago
- ☆22Updated 5 months ago
- A collection of papers on divergence and quality diversity☆76Updated 2 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated this week
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago