emilydolson / phylotrackpy
Python phylogeny tracker for in silico evolution experiments
☆10Updated 2 months ago
Related projects: ⓘ
- Repository to host data standards for the ALIFE community.☆15Updated last year
- DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality☆30Updated last year
- Dataset and scripts to create a Phylogeny of Plant Emojis☆15Updated 7 months ago
- ☆9Updated 4 months ago
- Lecture slides, exercises, assessments, exam questions for teachers and students of Artificial Life.☆40Updated 2 years ago
- EC-KitY is a scikit-learn-compatible Python tool kit for doing evolutionary computation.☆88Updated 2 weeks ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆43Updated 2 months ago
- Modular Agent Based Evolution Framework☆76Updated 3 weeks ago
- Hypothesis extension for computational biology☆15Updated last year
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated 5 months ago
- GPU-accelerated multicellular modelling framework☆56Updated 5 months ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆12Updated last year
- A simplified python interface to COPASI.☆19Updated 3 weeks ago
- egtplot: A python package for 3-Strategy Evolutionary Games☆48Updated 5 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated this week
- SBOL Designer Project☆27Updated 3 years ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆15Updated 2 years ago
- Simulate microbial community batch culture experiments.☆40Updated 2 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆44Updated 3 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated last year
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆21Updated last month
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated 11 months ago
- Multiscale simulation of multi-cellular system☆26Updated 4 years ago
- ☆14Updated last month
- A Python interface for Minecraft built on gRPC☆123Updated 2 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆19Updated 2 months ago
- Push Genetic Programming in Python.☆73Updated last year