Alternatives and similar repositories for phylotrackpy

Users that are interested in phylotrackpy are comparing it to the libraries listed below

• alife-data-standards / alife-data-standards
  Repository to host data standards for the ALIFE community.
  ☆16Updated 2 years ago
• mmore500 / dishtiny
  DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality
  ☆31Updated 3 weeks ago
• anyaevostinar / SymbulationEmp
  Symbulation is a software model of symbiosis built using Empirical
  ☆15Updated last month
• ghuertaramos / PlantPhylomoji
  Dataset and scripts to create a Phylogeny of Plant Emojis
  ☆17Updated 2 years ago
• tresoldi / ngesh
  A Python library for generating random phylogenetic trees and related data
  ☆13Updated 3 years ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆52Updated last month
• Hintzelab / MABE
  Modular Agent Based Evolution Framework
  ☆86Updated 10 months ago
• eWaterCycle / setup-singularity
  GitHub action to setup singularity
  ☆18Updated 2 years ago
• thelmuth / psb2-python
  ☆11Updated 3 months ago
• GreenAlgorithms / GreenAlgorithms4HPC
  ☆68Updated last year
• EC-KitY / EC-KitY
  EC-KitY: A scikit-learn-compatible Python tool kit for doing evolutionary computation.
  ☆102Updated 5 months ago
• lantunes / netomaton
  Automata on arbitrary networks, with Python
  ☆66Updated 2 years ago
• niemasd / CompactTree
  Lightweight header-only C++ library for loading and traversing trees
  ☆20Updated 11 months ago
• gchure / reproducible_research
  A template repository for how I structure my scientific research
  ☆109Updated last year
• diyabc / abcranger
  ABC random forests for model choice and parameter estimation, pure C++ implementation
  ☆10Updated last year
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆61Updated 2 weeks ago
• theosanderson / taxonium
  A tool for exploring large trees in the browser
  ☆119Updated last week
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆95Updated 3 years ago
• sybila / biodivine-boolean-models
  A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.
  ☆18Updated 3 weeks ago
• SynBioDex / tyto
  Use ontology terms in your Python application
  ☆20Updated 8 months ago
• dlce-eva / python-newick
  python package to read and write the Newick format
  ☆48Updated 10 months ago
• niemasd / TreeSwift
  TreeSwift: Fast tree module for Python 3
  ☆84Updated last year
• toulbar2 / toulbar2
  Exact optimization for cost function networks and additive graphical models
  ☆62Updated 3 weeks ago
• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆71Updated 9 months ago
• bramvandijk88 / cacatoo
  A javascript library for building, exploring, and sharing spatially structured models of biological systems
  ☆16Updated last week
• sztal / pybdm
  Python implementation of block decomposition method for approximating algorithmic complexity
  ☆38Updated last year
• tskit-dev / tskit
  Population-scale Ancestral Recombination Graph (ARG) library
  ☆176Updated this week
• eWaterCycle / setup-apptainer
  GitHub action to setup apptainer
  ☆16Updated last year
• jeetsukumaran / DendroPy
  A Python library for phylogenetic scripting, simulation, data processing and manipulation.
  ☆229Updated last month
• erp12 / pyshgp
  Push Genetic Programming in Python.
  ☆78Updated 2 years ago