Alternatives and similar repositories for phylotrackpy

Users that are interested in phylotrackpy are comparing it to the libraries listed below

• alife-data-standards / alife-data-standards
  Repository to host data standards for the ALIFE community.
  ☆16Updated 2 years ago
• anyaevostinar / SymbulationEmp
  Symbulation is a software model of symbiosis built using Empirical
  ☆15Updated 2 weeks ago
• mmore500 / dishtiny
  DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality
  ☆31Updated last month
• ghuertaramos / PlantPhylomoji
  Dataset and scripts to create a Phylogeny of Plant Emojis
  ☆17Updated last year
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆52Updated last week
• gchure / reproducible_research
  A template repository for how I structure my scientific research
  ☆108Updated last year
• tskit-dev / tskit
  Population-scale Ancestral Recombination Graph (ARG) library
  ☆176Updated this week
• tresoldi / ngesh
  A Python library for generating random phylogenetic trees and related data
  ☆13Updated 3 years ago
• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆70Updated 9 months ago
• jeetsukumaran / DendroPy
  A Python library for phylogenetic scripting, simulation, data processing and manipulation.
  ☆229Updated last week
• GreenAlgorithms / GreenAlgorithms4HPC
  ☆68Updated last year
• niemasd / TreeSwift
  TreeSwift: Fast tree module for Python 3
  ☆84Updated last year
• thelmuth / psb2-python
  ☆11Updated 3 months ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆27Updated 2 years ago
• ihh / trajectory-likelihood
  Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
  ☆14Updated 3 years ago
• dlce-eva / python-newick
  python package to read and write the Newick format
  ☆48Updated 10 months ago
• EC-KitY / EC-KitY
  EC-KitY: A scikit-learn-compatible Python tool kit for doing evolutionary computation.
  ☆101Updated 4 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last week
• hoffmangroup / pdfcomments
  ☆129Updated 2 years ago
• diyabc / abcranger
  ABC random forests for model choice and parameter estimation, pure C++ implementation
  ☆10Updated last year
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 11 months ago
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆95Updated 3 years ago
• BioJulia / GenomeGraphs.jl
  A modern genomics framework for julia
  ☆71Updated 5 years ago
• niemasd / CompactTree
  Lightweight header-only C++ library for loading and traversing trees
  ☆20Updated 10 months ago
• lantunes / netomaton
  Automata on arbitrary networks, with Python
  ☆66Updated 2 years ago
• Emergent-Behaviors-in-Biology / community-simulator
  Simulate microbial community batch culture experiments.
  ☆43Updated last year
• eWaterCycle / setup-singularity
  GitHub action to setup singularity
  ☆18Updated 2 years ago
• bramvandijk88 / cacatoo
  A javascript library for building, exploring, and sharing spatially structured models of biological systems
  ☆16Updated last month
• manubot / rootstock
  Clone me to create your Manubot manuscript
  ☆468Updated this week