emilydolson / phylotrackpy
Python phylogeny tracker for in silico evolution experiments
☆10Updated 3 months ago
Alternatives and similar repositories for phylotrackpy:
Users that are interested in phylotrackpy are comparing it to the libraries listed below
- Repository to host data standards for the ALIFE community.☆15Updated last year
- Symbulation is a software model of symbiosis built using Empirical☆13Updated last week
- DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality☆30Updated 2 years ago
- Dataset and scripts to create a Phylogeny of Plant Emojis☆16Updated last year
- ☆10Updated 10 months ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆44Updated 4 months ago
- Population-scale Ancestral Recombination Graph (ARG) library☆162Updated this week
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- python package to read and write the Newick format☆47Updated 3 weeks ago
- A javascript library for building, exploring, and sharing spatially structured models of biological systems☆14Updated 2 weeks ago
- GPU-accelerated multicellular modelling framework☆60Updated last year
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- Source code for SimBac, a bacterial genome simulator☆13Updated 6 months ago
- A general-purpose forward-time population genetics simulation environment.☆34Updated 6 months ago
- Lecture slides, exercises, assessments, exam questions for teachers and students of Artificial Life.☆40Updated 2 years ago
- EC-KitY: A scikit-learn-compatible Python tool kit for doing evolutionary computation.☆93Updated 2 months ago
- Interactive visualization method for ancestral recombination graphs☆10Updated this week
- egtplot: A python package for 3-Strategy Evolutionary Games☆49Updated 6 years ago
- TreeSwift: Fast tree module for Python 3☆80Updated 4 months ago
- A Python interface for Minecraft built on gRPC☆124Updated 2 years ago
- Lightweight header-only C++ library for loading and traversing trees☆15Updated 3 weeks ago
- ☆60Updated 6 months ago
- Tiny Genetic Programming in Python.☆100Updated 2 years ago
- ☆21Updated 6 months ago
- ☆16Updated 8 months ago
- PASTA (Practical Alignment using SATe and Transitivity)☆89Updated 7 months ago
- Forward-time simulation in Python using fwdpp☆30Updated this week
- Library for analyzing and manipulating phylogenetic trees☆13Updated this week
- A tool for exploring large trees in the browser☆108Updated last week
- A template repository for how I structure my scientific research☆94Updated 10 months ago