emilydolson / phylotrackpy
Python phylogeny tracker for in silico evolution experiments
☆11Updated 4 months ago
Alternatives and similar repositories for phylotrackpy:
Users that are interested in phylotrackpy are comparing it to the libraries listed below
- Repository to host data standards for the ALIFE community.☆15Updated 2 years ago
- Symbulation is a software model of symbiosis built using Empirical☆13Updated 2 weeks ago
- DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality☆30Updated 2 years ago
- Dataset and scripts to create a Phylogeny of Plant Emojis☆16Updated last year
- Modular Agent Based Evolution Framework☆82Updated 2 weeks ago
- A javascript library for building, exploring, and sharing spatially structured models of biological systems☆14Updated this week
- ☆10Updated 11 months ago
- Lecture slides, exercises, assessments, exam questions for teachers and students of Artificial Life.☆40Updated 3 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- GPU-accelerated multicellular modelling framework☆61Updated this week
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- python package to read and write the Newick format☆48Updated last month
- Modeling toolkit for biochemical simulation☆74Updated 3 months ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago
- TreeSwift: Fast tree module for Python 3☆80Updated 5 months ago
- egtplot: A python package for 3-Strategy Evolutionary Games☆49Updated 6 years ago
- Library for analyzing and manipulating phylogenetic trees☆14Updated 3 weeks ago
- Lightweight header-only C++ library for loading and traversing trees☆18Updated last month
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- Statistical estimators to predict a population's cardinality https://pydistinct.readthedocs.io/☆20Updated 5 years ago
- Efficient calculation of phylogenetic distance matrices.☆47Updated 6 months ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆28Updated 2 months ago
- Source code for SimBac, a bacterial genome simulator☆13Updated 7 months ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 2 months ago
- Simulate microbial community batch culture experiments.☆42Updated 5 months ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆215Updated last month
- Artificial chemistry☆21Updated 7 years ago
- Use ontology terms in your Python application☆19Updated 2 months ago
- Simple Manipulation Of Trees☆13Updated 2 years ago