cmu-delphi / epiforecast-RLinks
R package to implement and visualize several epidemiological forecasting methods.
☆20Updated last year
Alternatives and similar repositories for epiforecast-R
Users that are interested in epiforecast-R are comparing it to the libraries listed below
Sorting:
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- ☆42Updated 2 months ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Short course on parametric survival analysis☆15Updated 11 months ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- R Package - Dynamical Systems Approach to Infectious Disease Epidemiology☆26Updated last year
- R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series☆15Updated 2 months ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Updated 3 years ago
- SEIR+ model☆19Updated 3 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 months ago
- R package to run Bayesian MMRMs using {brms}☆22Updated 3 months ago
- Tools for building predictive models in epidemiology.☆15Updated last month
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- CRAN Task View: Epidemiology☆24Updated 3 weeks ago
- An R package with Dynamic Models of infectious diseases☆30Updated 11 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆21Updated 3 weeks ago
- Monte-Carlo State Space Models☆19Updated last year
- ☆10Updated last year
- Code and methods for COVID19 lagged mobility and sociodemographic association model US county-level☆11Updated 4 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆20Updated last month
- ☆31Updated 2 weeks ago
- Book on Dynamical Systems Approaches to Infectious Disease Epidemiology☆10Updated 3 years ago
- Infectious disease model library and utilities☆14Updated 3 years ago
- R Code for Causal Inference by Hernán and Robins☆22Updated 4 years ago
- ☆14Updated 2 years ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated 2 months ago
- PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?☆11Updated 5 years ago
- Estimate epidemiological delay distributions with brms☆15Updated this week