AllanSCosta / semantic-protein-foldingLinks
Experiments in protein folding through language modeling
☆10Updated 4 years ago
Alternatives and similar repositories for semantic-protein-folding
Users that are interested in semantic-protein-folding are comparing it to the libraries listed below
Sorting:
- Synthetic coordinates for GNNs, as proposed in "Directional Message Passing on Molecular Graphs via Synthetic Coordinates" (NeurIPS 2021)☆31Updated 2 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆76Updated 4 years ago
- ☆25Updated 3 years ago
- An experimental package for deep learning for molecular docking☆20Updated 5 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 5 years ago
- ☆34Updated 5 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- pytorch implementation of trDesign☆45Updated 4 years ago
- UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)☆16Updated 8 years ago
- Molecular Reinforcement Learning☆14Updated 2 years ago
- Make valid molecular graphs!☆23Updated last year
- SE(3)-equivariant point cloud networks for virtual screening☆24Updated 2 years ago
- A modular framework for neural networks with Euclidean symmetry☆11Updated last year
- ☆21Updated 5 years ago
- ☆31Updated 4 years ago
- Graph Inference on MoLEcular Topology☆26Updated 2 years ago
- The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)☆36Updated 3 years ago
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆30Updated 4 years ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21Updated 5 years ago
- Boltzmann machine learning for Potts models of biological data☆12Updated last year
- Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Updated 3 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆15Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Updated 2 years ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Updated 2 years ago
- Notebook tutorials for MolecularGraph.jl☆11Updated 5 months ago
- Library for training Gaussian Processes on Molecules☆36Updated 3 years ago
- coming soon☆28Updated 2 years ago
- Created a RNN with LSTM cells to learn patterns from SMILES Strings, and use them to generate new molecular structures.☆19Updated 6 years ago