AllanSCosta / semantic-protein-foldingLinks
Experiments in protein folding through language modeling
☆10Updated 3 years ago
Alternatives and similar repositories for semantic-protein-folding
Users that are interested in semantic-protein-folding are comparing it to the libraries listed below
Sorting:
- Synthetic coordinates for GNNs, as proposed in "Directional Message Passing on Molecular Graphs via Synthetic Coordinates" (NeurIPS 2021)☆31Updated 2 years ago
 - Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆75Updated 4 years ago
 - Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 4 years ago
 - A modular framework for neural networks with Euclidean symmetry☆11Updated last year
 - Notebook tutorials for MolecularGraph.jl☆11Updated 4 months ago
 - ☆25Updated 3 years ago
 - Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
 - Boltzmann machine learning for Potts models of biological data☆12Updated last year
 - Graph Inference on MoLEcular Topology☆26Updated 2 years ago
 - An experimental package for deep learning for molecular docking☆20Updated 5 years ago
 - The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)☆36Updated 3 years ago
 - pytorch implementation of trDesign☆45Updated 4 years ago
 - ☆34Updated 5 years ago
 - Molecular Reinforcement Learning☆14Updated 2 years ago
 - ☆31Updated 4 years ago
 - UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)☆16Updated 8 years ago
 - This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 3 years ago
 - Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆13Updated last year
 - ☆40Updated 3 years ago
 - Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
 - ☆21Updated 5 years ago
 - Autonomous characterization of molecular compounds from small datasets without descriptors☆44Updated 4 months ago
 - Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆30Updated 4 years ago
 - Make valid molecular graphs!☆23Updated last year
 - Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆15Updated last year
 - PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
 - Predict disorder and disorder binding from AlphaFold structures☆17Updated 11 months ago
 - Python package built around protein structure and dynamics. OpenBabel-inspired objects.☆37Updated 5 months ago
 - Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
 - Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆51Updated last year