biod / BioDLinks
A D library for computational biology and bioinformatics
☆49Updated 4 years ago
Alternatives and similar repositories for BioD
Users that are interested in BioD are comparing it to the libraries listed below
Sorting:
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- useful command-line tools written to showcase hts-nim☆50Updated 5 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 15 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Updated 7 years ago
- collection of data structures and algorithms☆19Updated 6 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated 2 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- Structural variant pipeline☆18Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10Updated 7 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Snakemake tutorial materials☆19Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Updated 10 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆19Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- A C library for handling bigWig files☆81Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- A straightforward and complete next-generation sequencing read simulator☆22Updated last year
- ☆12Updated 10 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- full taxonomer cython repository☆22Updated 6 years ago