Alternatives and similar repositories for OpenComplex

Users that are interested in OpenComplex are comparing it to the libraries listed below

• EDAPINENUT / CBGBench
  Official code repository of < CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph >
  ☆309Updated 3 weeks ago
• EDAPINENUT / ppflow
  This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)
  ☆83Updated 4 months ago
• Hanziwww / AlphaFold3-GUI
  AFusion: AlphaFold 3 GUI & Toolkit with Visualization
  ☆158Updated 3 weeks ago
• blazerye / DrugAssist
  [Briefings In Bioinformatics] DrugAssist: A Large Language Model for Molecule Optimization
  ☆135Updated 6 months ago
• CYF2000127 / MolNexTR
  This is the official code of the paper "MolNexTR: a generalized deep learning model for molecular image recognition"
  ☆143Updated last month
• GenerTeam / GENERator
  GENERator: A Long-Context Generative Genomic Foundation Model
  ☆431Updated last week
• acharkq / NExT-Mol
  Source code for ICLR2025 paper "NExT-Mol: 3D Diffusion Meets 1D Language Modeling for 3D Molecule Generation".
  ☆88Updated last month
• acharkq / MolCA
  Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".
  ☆82Updated last year
• fudan-generative-vision / dynamicPDB
  [AAAI 2025] Dynamic Protein Data Bank
  ☆767Updated 2 months ago
• MangoKiller / MolTC
  ☆166Updated last year
• zmyybc / AlphaNet
  A Local Frame-based Atomistic Potential
  ☆111Updated 2 weeks ago
• acharkq / ProtT3
  Source code for ACL 2024 paper: "ProtT3: Protein-to-Text Generation for Text-based Protein Understanding"
  ☆45Updated last year
• LUOyk1999 / GNNPlus
  [ICML 2025] Implementation of "GNN+ (ModernGNN): Can Classic GNNs Be Strong Baselines for Graph-level Tasks?"
  ☆78Updated last month
• MasterAI-EAM / Darwin
  An open-source project dedicated to build foundational large language model for natural science, mainly in physics, chemistry and materia…
  ☆244Updated 7 months ago
• xbiome / protein-annotation
  ☆44Updated 6 months ago
• ISYSLAB-HUST / SSAlign
  SSAlign
  ☆45Updated last month
• Lzcstan / DrugLAMP
  A PyTorch-based system for highly accurate drug-target interaction predictions utilizing multi-modal large language models to discern str…
  ☆34Updated last year
• jgi-genomeocean / genomeocean
  The official implementation of GenomeOcean.
  ☆136Updated 3 weeks ago
• DaoyuanLi2816 / Molecule-Generator
  Variational Autoencoder (VAE)-based molecular SMILES string generator
  ☆13Updated 5 months ago
• zhichunguo / Meta-MGNN
  Few-Shot Graph Learning for Molecular Property Prediction
  ☆138Updated 2 years ago
• tsynbio / TourSynbio
  ☆18Updated last year
• pineappleK / ED2Mol
  Electron-density-informed effective and reliable de novo molecular design and optimization with ED2Mol
  ☆113Updated 3 weeks ago
• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆212Updated 2 months ago
• bytedance / dplm
  The Family of Diffusion Protein Language Models (DPLM)
  ☆265Updated 2 months ago
• bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
  ☆42Updated 2 years ago
• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆44Updated 11 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆96Updated 2 years ago
• bjing2016 / EigenFold
  EigenFold: Generative Protein Structure Prediction with Diffusion Models
  ☆177Updated 2 years ago
• PKU-YuanGroup / TaxDiff
  The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"
  ☆70Updated last year
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆94Updated 9 months ago