Alternatives and similar repositories for AlphaFold3-GUI

Users that are interested in AlphaFold3-GUI are comparing it to the libraries listed below

• blazerye / DrugAssist
  [Briefings In Bioinformatics] DrugAssist: A Large Language Model for Molecule Optimization
  ☆129Updated last month
• EDAPINENUT / ppflow
  This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)
  ☆76Updated 2 months ago
• baaihealth / OpenComplex
  Trainable PyTorch framework for developing protein, RNA and complex models.
  ☆256Updated 6 months ago
• EDAPINENUT / CBGBench
  Official code repository of < CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph >
  ☆282Updated last month
• GenerTeam / GENERator
  GENERator: A Long-Context Generative Genomic Foundation Model
  ☆408Updated last month
• acharkq / NExT-Mol
  Source code for ICLR2025 paper "NExT-Mol: 3D Diffusion Meets 1D Language Modeling for 3D Molecule Generation".
  ☆75Updated last month
• CYF2000127 / MolNexTR
  This is the official code of the paper "MolNexTR: a generalized deep learning model for molecular image recognition"
  ☆93Updated last week
• Lzcstan / DrugLAMP
  A PyTorch-based system for highly accurate drug-target interaction predictions utilizing multi-modal large language models to discern str…
  ☆33Updated last year
• fudan-generative-vision / dynamicPDB
  [AAAI 2025] Dynamic Protein Data Bank
  ☆755Updated 3 weeks ago
• MangoKiller / MolTC
  ☆168Updated 9 months ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆116Updated 3 weeks ago
• huzongxiang / MatDGL
  MatDGL is a neural network package that allows researchers to train custom models for crystal modeling tasks. It aims to accelerate the r…
  ☆52Updated 9 months ago
• rs239 / abmap
  Protein language model customized for antibodies
  ☆131Updated last month
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆101Updated last week
• acharkq / MolCA
  Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".
  ☆82Updated last year
• GenerTeam / GENERanno
  GENERanno: A Unified Genomic Foundation Model with Specialization in Gene Annotation
  ☆92Updated last month
• xbiome / protein-annotation
  ☆43Updated last month
• bytedance / dplm
  Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners
  ☆159Updated last week
• westlake-repl / Evolla
  ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.
  ☆47Updated 2 months ago
• acharkq / ProtT3
  Source code for ACL 2024 paper: "ProtT3: Protein-to-Text Generation for Text-based Protein Understanding"
  ☆40Updated 11 months ago
• tencent-ailab / Interformer
  ☆96Updated last month
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆62Updated last month
• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆157Updated 2 months ago
• DaoyuanLi2816 / Molecule-Generator
  Variational Autoencoder (VAE)-based molecular SMILES string generator
  ☆11Updated 2 weeks ago
• yifengtao / genome-transformer
  Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
  ☆63Updated 5 years ago
• microsoft / peft_proteomics
  LoRA for protein language models
  ☆37Updated last year
• westlake-repl / Denovo-Pinal
  Text-guided protein design
  ☆49Updated last month
• GBLille / MassiveFold
  ☆93Updated 2 weeks ago
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆61Updated 3 weeks ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆79Updated 11 months ago