Alternatives and similar repositories for AlphaFold3-GUI:

Users that are interested in AlphaFold3-GUI are comparing it to the libraries listed below

• blazerye / DrugAssist
  DrugAssist: A Large Language Model for Molecule Optimization
  ☆126Updated last month
• baaihealth / OpenComplex
  Trainable PyTorch framework for developing protein, RNA and complex models.
  ☆244Updated 4 months ago
• EDAPINENUT / ppflow
  This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)
  ☆68Updated this week
• EDAPINENUT / CBGBench
  Official code repository of < CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph >
  ☆269Updated 3 weeks ago
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆56Updated 4 months ago
• rs239 / abmap
  Protein language model customized for antibodies
  ☆126Updated 2 months ago
• Lzcstan / DrugLAMP
  A PyTorch-based system for highly accurate drug-target interaction predictions utilizing multi-modal large language models to discern str…
  ☆33Updated 11 months ago
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆113Updated 3 weeks ago
• tencent-ailab / Interformer
  ☆84Updated last month
• ElanaPearl / InterPLM
  Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders
  ☆159Updated last month
• ginnm / ProteinPretraining
  Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.
  ☆32Updated 2 months ago
• bytedance / dplm
  Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners
  ☆125Updated last week
• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆36Updated 4 months ago
• ProtLLM / ProtLLM
  [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training
  ☆43Updated 11 months ago
• PKU-YuanGroup / ProLLaMA
  A Protein Large Language Model for Multi-Task Protein Language Processing
  ☆166Updated 2 weeks ago
• GBLille / MassiveFold
  ☆86Updated this week
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated 5 months ago
• PKU-YuanGroup / TaxDiff
  The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"
  ☆63Updated 6 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆90Updated last week
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆33Updated 2 years ago
• lucidrains / progen
  Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
  ☆112Updated 3 years ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆75Updated 9 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆100Updated this week
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆124Updated last week
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆50Updated 3 weeks ago
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago
• acharkq / MolCA
  Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".
  ☆77Updated last year