Alternatives and similar repositories for archetypes:

Users that are interested in archetypes are comparing it to the libraries listed below

• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• sunericd / dynamicviz
  ☆58Updated 2 months ago
• IIT-LAND / reval_clustering
  ☆29Updated 3 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• rockdeme / chrysalis
  Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
  ☆16Updated 3 months ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆31Updated last month
• quantixed / manuscript-templates
  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
  ☆74Updated 9 months ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆24Updated 3 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• bmda-unibas / DeepArchetypeAnalysis
  TensorFlow-Implementation of Deep Archetypal Analysis
  ☆12Updated 3 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• puolival / multipy
  Multiple hypothesis testing in Python
  ☆105Updated 7 months ago
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆18Updated 2 years ago
• biocompibens / pySpacell
  A Python package for single-cell spatial image analysis.
  ☆18Updated last year
• bagrow / network-portrait-divergence
  An information-theoretic, all-scales approach to comparing networks
  ☆31Updated 2 years ago
• dougollerenshaw / figrid
  Utilities for formatting matplotlib figures
  ☆31Updated 2 weeks ago
• qbarthelemy / PyPermut
  Python package for permutation tests, for statistics and machine learning.
  ☆21Updated 5 months ago
• wilsonjr / ClusterShapley
  Explaining dimensionality results using SHAP values
  ☆53Updated last month
• Genentech / dcdfg
  ☆23Updated 2 years ago
• uhlerlab / causaldag
  Python package for the creation, manipulation, and learning of Causal DAGs
  ☆151Updated last year
• j-bac / elpigraph-python
  Python implementation of the ElPiGraph algorithm with cpu and gpu support
  ☆16Updated 5 months ago
• ZigaSajovic / Consensus_Clustering
  An implementation of Consensus clustering in Python
  ☆61Updated 10 months ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆49Updated last year
• neurodata / lollipop
  Linear Optimal Low Rank Projection
  ☆18Updated 5 years ago
• Morwey / ezreverse
  A Python Shiny project with Joachim Goedhart
  ☆17Updated 8 months ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated 10 months ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆19Updated 6 years ago
• berenslab / patch-seq-rrr
  Sparse reduced-rank regression
  ☆20Updated 2 months ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 5 years ago