frenkowski / Deep_Learning_for_Bacteria_Identification_using_Raman_SpectroscopyLinks
We apply deep learning approaches to accurately identify 30 common bacterial pathogens, achieving an average isolate-level accuracy of over 78% and an antibiotic treatment identification accuracy of 95%.
☆13Updated 4 years ago
Alternatives and similar repositories for Deep_Learning_for_Bacteria_Identification_using_Raman_Spectroscopy
Users that are interested in Deep_Learning_for_Bacteria_Identification_using_Raman_Spectroscopy are comparing it to the libraries listed below
Sorting:
- Component Identification with Raman Spectroscopy Made Easy☆19Updated last year
- Source code and demos for "Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning"☆107Updated 6 years ago
- Generator useful to handle Raman spectra data augmentation for deep learning models☆28Updated 2 years ago
- MODA (Massive Online Data Annotation) Groups Consensus (GC) set of spindles☆12Updated 2 years ago
- Implementation of PLS-DA and OPLS-DA for high dimensional data, like MS in metabolomics.☆37Updated 7 months ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆84Updated 3 years ago
- A Python toolkit for dimensionality reduction quality assessment☆18Updated 3 years ago
- The purpose of this repository is to use Transfer Learning in order to classify patients affected by Amyotrophic Lateral Sclerosis using …☆13Updated 4 years ago
- baseline correction using adaptive iteratively reweighted Penalized Least Squares☆133Updated 9 months ago
- Semi-automated preprocessing of NIRS data☆99Updated 2 years ago
- The similarity score for spectral comparison☆84Updated 11 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 6 months ago
- A Universal and Accurate Method for Easily Component identification in Raman Spectroscopy Based on Deep Learning☆35Updated 3 months ago
- Word2Vec based similarity measure of mass spectrometry data.☆78Updated 2 months ago
- Framework for Raman spectroscopy analysis☆17Updated last year
- ☆121Updated 2 years ago
- ☆16Updated 3 weeks ago
- 1 Dimensional Convolutional Neural Network for Iris dataset classification☆14Updated 4 years ago
- Deep CNN for Raman Applications☆51Updated 7 years ago
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15Updated 4 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Updated 4 years ago
- A deep learning-based lncRNA subcellular localization predictor☆16Updated 3 years ago
- Deep-Learning-Based Components Identification for Raman Spectroscopy☆50Updated 6 years ago
- ☆20Updated 3 years ago
- python toolkit for calibration of near infrared ( NIR) spectra☆18Updated last year
- a novel calibration model named SpectraTr, based on the transformer structure is proposed and used for the qualitative analysis of drug s…☆25Updated 3 years ago
- (Multiblock) Partial Least Squares Regression for Python☆33Updated 6 years ago
- Predictors for Blood-Brain Barrier Permeability with resampling strategies based on B3DB database.☆13Updated 5 months ago
- Package to preprocess ontologies and train OntoVAE models.☆12Updated last year
- ☆13Updated 4 years ago