frenkowski / Deep_Learning_for_Bacteria_Identification_using_Raman_SpectroscopyLinks
We apply deep learning approaches to accurately identify 30 common bacterial pathogens, achieving an average isolate-level accuracy of over 78% and an antibiotic treatment identification accuracy of 95%.
☆13Updated 4 years ago
Alternatives and similar repositories for Deep_Learning_for_Bacteria_Identification_using_Raman_Spectroscopy
Users that are interested in Deep_Learning_for_Bacteria_Identification_using_Raman_Spectroscopy are comparing it to the libraries listed below
Sorting:
- Component Identification with Raman Spectroscopy Made Easy☆18Updated 11 months ago
- Generator useful to handle Raman spectra data augmentation for deep learning models☆27Updated 2 years ago
- Source code and demos for "Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning"☆106Updated 6 years ago
- A Universal and Accurate Method for Easily Component identification in Raman Spectroscopy Based on Deep Learning☆33Updated last month
- Implementation of PLS-DA and OPLS-DA for high dimensional data, like MS in metabolomics.☆37Updated 5 months ago
- The purpose of this repository is to use Transfer Learning in order to classify patients affected by Amyotrophic Lateral Sclerosis using …☆13Updated 4 years ago
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15Updated 4 years ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆84Updated 3 years ago
- The similarity score for spectral comparison☆82Updated 9 months ago
- MODA (Massive Online Data Annotation) Groups Consensus (GC) set of spindles☆12Updated 2 years ago
- Similarity network fusion in Python☆89Updated 5 years ago
- Framework for Raman spectroscopy analysis☆16Updated last year
- python toolkit for calibration of near infrared ( NIR) spectra☆18Updated 11 months ago
- ☆20Updated 3 years ago
- A Python toolkit for dimensionality reduction quality assessment☆18Updated 3 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆29Updated 4 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 4 months ago
- Word2Vec based similarity measure of mass spectrometry data.☆77Updated last month
- Patch-based Convlutional Encoder for vibrational spectrum recognition☆13Updated last year
- baseline correction using adaptive iteratively reweighted Penalized Least Squares☆128Updated 7 months ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 5 years ago
- Open Raman Processing Library☆46Updated last week
- ☆26Updated this week
- Predictors for Blood-Brain Barrier Permeability with resampling strategies based on B3DB database.☆13Updated 4 months ago
- 1 Dimensional Convolutional Neural Network for Iris dataset classification