A domain specific language for creating scientific pipelines
☆15Mar 11, 2026Updated last week
Alternatives and similar repositories for sophios
Users that are interested in sophios are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fully scalable robust image feature extraction library.☆28Updated this week
- Prepare topology and coordinate file for CG models in Genesis.☆13Jul 3, 2025Updated 8 months ago
- Interface to the Bioformats Java library☆13Feb 17, 2026Updated last month
- ☆13Jun 25, 2022Updated 3 years ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Mar 13, 2018Updated 8 years ago
- Sample code for "Predicting polymer-solvent miscibility using machine-learned Flory-Huggins interaction parameters☆17Mar 27, 2024Updated last year
- ☆15Jun 7, 2022Updated 3 years ago
- A translator from WDL to CWL v1.2☆27Jan 19, 2026Updated 2 months ago
- This is a deep learning model used to predict molecular energy☆13May 30, 2019Updated 6 years ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- A Jupyter extension for fsspec☆17Aug 27, 2025Updated 6 months ago
- Julia bindings to chemfiles☆43Aug 22, 2025Updated 7 months ago
- Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.☆16Dec 20, 2022Updated 3 years ago
- Protein solubility prediction tools☆22Dec 13, 2024Updated last year
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power do…☆18Mar 16, 2026Updated last week
- A fully GPU-accelerated molecular dynamics program for the Martini force field☆35Sep 13, 2023Updated 2 years ago
- ⚙️ Generate Components.js component files from TypeScript☆14Updated this week
- Example of using JupyterHub with JupyterLab RTC☆11Dec 17, 2021Updated 4 years ago
- Browser UI for REPtiLe - a shared REPL☆13May 14, 2019Updated 6 years ago
- Web Image Processing Pipeline (WIPP)☆26Dec 19, 2025Updated 3 months ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆16Jan 27, 2026Updated last month
- GROMACS implementation of TraPPE-UA force field with HH-Alkane modifications☆13Sep 24, 2022Updated 3 years ago
- 🥞 Zero-to-JupyterHub with Kubernetes using an opinionated tech stack☆12Aug 12, 2019Updated 6 years ago
- Python utilities for CWL☆42Jan 19, 2026Updated 2 months ago
- Julia implementation of flash-attention operation for neural networks.☆11May 31, 2023Updated 2 years ago
- A lightweight neural network library using resilient propagation (rprop) for adapting the weights☆11Jul 22, 2014Updated 11 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13Feb 10, 2026Updated last month
- Example game for the advenjure engine☆10Oct 15, 2017Updated 8 years ago
- Tools to work with the CRAB open data☆14Nov 5, 2013Updated 12 years ago
- Learning free energy landscapes using artificial neural networks☆14Nov 30, 2017Updated 8 years ago
- A benchmark for Solid to simulate vaults with social network data.☆11Aug 29, 2025Updated 6 months ago
- repo of all my TidalCycles code from live performances and frequent nightly music production explorations from 2021 onwards☆13Aug 22, 2025Updated 7 months ago
- Locally-Scaled Diffusion Maps, DM-d-MD☆12May 12, 2016Updated 9 years ago
- ☆16Apr 9, 2024Updated last year
- Information about available credential formats☆14Nov 17, 2024Updated last year
- Repository for the family history/pedigree project☆13Feb 24, 2026Updated 3 weeks ago
- ☆10Sep 14, 2023Updated 2 years ago
- Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis☆22Updated this week
- CWL experimental grammar☆11Nov 16, 2025Updated 4 months ago