MDAnalysis / WorkshopPrace2021
Materials for the 2021 PRACE Workshop @ SurfSARA
☆31Updated 3 years ago
Alternatives and similar repositories for WorkshopPrace2021:
Users that are interested in WorkshopPrace2021 are comparing it to the libraries listed below
- MLP training for molecular systems☆41Updated last month
- A comprehensive tool for analyzing liquid solvation structure.☆46Updated 6 months ago
- Python version of the modified Seminario method code☆16Updated 4 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆63Updated last year
- Physical validation of molecular simulations☆56Updated 3 weeks ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- a tool for creating Molecular Dynamics-ready models of polymeric systems☆22Updated 5 years ago
- ☆22Updated 3 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆16Updated 7 months ago
- Density based object completion over PBC.☆27Updated last month
- Analyse Rotational Diffusion Tensor from MD Simulations☆16Updated 3 months ago
- Temperature generator for Replica Exchange MD simulations☆27Updated 2 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆30Updated 2 years ago
- ☆10Updated last year
- ☆10Updated 5 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 4 years ago
- ☆27Updated 2 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆30Updated last year
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆43Updated 3 years ago
- ☆57Updated 2 months ago
- Repository for material from the 2020 MC/MD Summer Workshop☆11Updated 6 months ago
- ☆64Updated last year
- Spectral Gap Optimization of Parameters☆17Updated 4 years ago
- Gromacs Topology Files for common Ionic Liquids☆18Updated 2 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆60Updated 2 years ago
- ☆61Updated last month
- Generates Martini models for open carbon nanotubes to use with Gromacs.☆13Updated 3 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- A Python package to compute and analyze transport properties.☆11Updated 5 months ago