arwalkerlab / AutoParamsLinks
☆28Updated last year
Alternatives and similar repositories for AutoParams
Users that are interested in AutoParams are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 months ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 5 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- ☆28Updated 3 months ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆33Updated last year
- ☆25Updated last year
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆57Updated 7 months ago
- Machine Learning model for molecular micro-pKa prediction☆44Updated last year
- A tutorials suite for BioSimSpace.☆30Updated 3 weeks ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- Set of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis☆18Updated last month
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- Dynamic pharmacophore modeling of molecular interactions☆36Updated last year
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆15Updated 2 years ago
- Computation of the drug-target relative residence times from RAMD simulations☆18Updated last year
- ☆16Updated 8 years ago
- ☆30Updated this week
- ☆32Updated last year
- A tool for the analysis of pathways sampled in molecular dynamics simulations based on Self-Organizing Maps (SOM)☆10Updated 3 years ago
- Tool to predict water molecules placement and energy in ligand binding sites☆33Updated last month
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 4 months ago
- LoQI: Low Energy QM Informed Conformer Generation☆41Updated last week
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation☆11Updated 3 years ago
- ☆35Updated last year
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆28Updated 11 months ago
- CReM-dock: generation of chemically reasonable molecules guided by molecular docking☆28Updated 2 months ago