arwalkerlab / AutoParamsLinks
☆27Updated last year
Alternatives and similar repositories for AutoParams
Users that are interested in AutoParams are comparing it to the libraries listed below
Sorting:
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- ☆28Updated last month
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆39Updated this week
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆18Updated 2 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- A tutorials suite for BioSimSpace.☆25Updated last month
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- Tool to predict water molecules placement and energy in ligand binding sites☆28Updated last week
- Different run and analysis scripts as described in the research guides.☆13Updated 2 years ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆50Updated 2 months ago
- ☆25Updated last year
- Computational Chemistry Workflows☆53Updated 2 years ago
- Machine Learning model for molecular micro-pKa prediction☆41Updated 8 months ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆31Updated 2 weeks ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆31Updated last year
- Standalone charge assignment from Espaloma framework.☆39Updated 11 months ago
- ☆36Updated 9 months ago
- Advanced toolkit for binding free energy calculations☆32Updated last week
- ☆34Updated last year
- ☆28Updated last month
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 5 years ago
- ☆24Updated 8 months ago
- ☆28Updated last year
- Set of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis☆17Updated 2 weeks ago
- ☆15Updated 8 years ago
- Repository for the 2024 OpenFE industry benchmark efforts☆22Updated this week
- RESP with inter- and intra-molecular constraints in Psi4.☆31Updated 2 years ago