Python tutorial for estimating and clustering free energy landscapes with InfleCS.
☆31May 6, 2022Updated 4 years ago
Alternatives and similar repositories for InfleCS-free-energy-clustering-tutorial
Users that are interested in InfleCS-free-energy-clustering-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Building and analyzing residue interaction networks with cofactors (includes tutorial).☆19Mar 31, 2021Updated 5 years ago
- ☆18Jan 15, 2026Updated 6 months ago
- A tutorial for Streamlined Alchemical Free Energy Perturbations with NAMD☆16Apr 3, 2026Updated 4 months ago
- ☆12Nov 15, 2020Updated 5 years ago
- ☆20Jun 26, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Nov 11, 2021Updated 4 years ago
- Adaptive string method implementation in AmberTools23 and Amber22☆15Jan 7, 2025Updated last year
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆35Jan 6, 2026Updated 7 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆43Apr 27, 2026Updated 3 months ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- PyEMMA Jupyter Notebooks☆13Jan 28, 2021Updated 5 years ago
- iPBSA minimizes docked receptor-ligand conformations in implicit solvent and calculates the binding free energy with MM/PB(GB)SA methods.…☆13Oct 10, 2023Updated 2 years ago
- ☆17Jun 27, 2026Updated last month
- TUPÃ: Electric field analyses for molecular simulations☆25Jun 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Screening protocol with AUTODOCK-GPU☆14Feb 27, 2023Updated 3 years ago
- ☆24Jan 16, 2024Updated 2 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆33Nov 13, 2022Updated 3 years ago
- A collection of scripts which I have developed to use GROMACS, for both compute clusters and post-simulation analysis.☆11Jul 15, 2014Updated 12 years ago
- Analysis of non-covalent interactions in MD trajectories☆69Jan 3, 2025Updated last year
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 5 years ago
- SST2 implementation in openmm☆23Jul 9, 2026Updated last month
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Aug 6, 2025Updated last year
- Tools for molecular Docking☆28Jul 24, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contained python code used to do organic free energy calculation. Reference: http://www.bevanlab.biochem.vt.edu/Pages/Per…☆11Aug 2, 2018Updated 8 years ago
- Molecular dynamics workflow framework in python.☆12Nov 15, 2022Updated 3 years ago
- Real time monitoring and visualization of Amber MD simulations☆17Feb 6, 2020Updated 6 years ago
- MDplot: Visualise Molecular Dynamics☆32Mar 23, 2022Updated 4 years ago
- Automatic CHARMM-GUI browser interaction with Python☆20Mar 20, 2023Updated 3 years ago
- scripts for analyzing molecular dynamics trajectories using VMD☆40May 28, 2015Updated 11 years ago
- Tool to predict water molecules placement and energy in ligand binding sites☆38Sep 16, 2025Updated 10 months ago
- ☆15Jun 11, 2024Updated 2 years ago
- ☆14Mar 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Wrap up Platform to launch all PELE features. [AdaptivePELE, MSM, LigandGrowing, Glide Rescoring]☆11Jul 10, 2026Updated 3 weeks ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Oct 27, 2022Updated 3 years ago
- ☆11Oct 18, 2019Updated 6 years ago
- ☆11Apr 4, 2021Updated 5 years ago
- ☆15Jun 26, 2018Updated 8 years ago
- Some of useful tcl scripts to analyse data from VMD☆15Aug 2, 2022Updated 4 years ago
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Jul 21, 2026Updated 2 weeks ago