command line viewer for molecular dynamics simulations
☆31Jul 8, 2026Updated this week
Alternatives and similar repositories for cmd-viewer
Users that are interested in cmd-viewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parameter Refinement Engine for Smirnoff Training / Optimisation. Train bespoke SMIRNOFF force fields quickly using a machine learning po…☆22Updated this week
- ☆53Jul 2, 2026Updated last week
- 💊 Cutting-edge automation of computational drug discovery pipelines☆37Jun 14, 2026Updated last month
- ☆14May 13, 2020Updated 6 years ago
- Exercises on Python coding☆74Jul 7, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆19Updated this week
- Bottom-up Open-source Coarse-graining Software☆24Jun 12, 2026Updated last month
- Tools to build coarse grained models and perform simulations with OpenMM☆24Dec 16, 2022Updated 3 years ago
- ☆25Jun 10, 2026Updated last month
- Flexibility-conditioned protein structure design☆36Mar 10, 2026Updated 4 months ago
- Allegro-pol extends the Allegro architecture to model the electric response of materials☆38May 30, 2026Updated last month
- Massively parallel hybrid particle-field molecular dynamics in Python.☆30Sep 6, 2024Updated last year
- Schrödinger Sketcher☆36Updated this week
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆29Dec 4, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10May 2, 2025Updated last year
- Codebase for SigmaDock: Untwisting Molecular Docking with SE(3) Fragmented Diffusion☆91Apr 7, 2026Updated 3 months ago
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- ☆19Jun 2, 2026Updated last month
- A snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS☆168May 9, 2026Updated 2 months ago
- Reads Gromacs EDR file to populate a pandas dataframe☆34Oct 12, 2025Updated 9 months ago
- ☆13Jul 17, 2025Updated 11 months ago
- Control PyMOL with natural language prompts using an LLM to make better figures, analyze structures, and more...☆39May 19, 2026Updated last month
- python interface to tetgen☆10Dec 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 9 years ago
- Stack of codes for dedicated pre- and post-processing tasks for Quantum Machine Learning (QML)☆19Jul 5, 2026Updated last week
- ☆78Updated this week
- ASE calculator wrapper for g-xTB☆28Jul 4, 2025Updated last year
- Modern and fast molecular analysis and modeling library for C++ and Python☆37Apr 21, 2025Updated last year
- Efficient Sampling of PROTAC-Induced Ternary Complexes☆17Jun 3, 2025Updated last year
- ☆14Jul 24, 2023Updated 2 years ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 3 months ago
- ⛰️ PrexSyn: Efficient and Programmable Exploration of Synthesizable Chemical Space☆53Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Jun 23, 2025Updated last year
- a tool for creating Molecular Dynamics-ready models of polymeric systems☆24Feb 25, 2019Updated 7 years ago
- A lightweight script to make vector images of molecules☆20Oct 17, 2025Updated 8 months ago
- ☆35Nov 22, 2023Updated 2 years ago
- ☆10Jun 28, 2025Updated last year
- Supplementary scripts for Z1+ users☆19Dec 12, 2025Updated 7 months ago
- A tool for the analysis of pathways sampled in molecular dynamics simulations based on Self-Organizing Maps (SOM)☆10Jan 26, 2022Updated 4 years ago