MDAnalysis / panedrLinks
Reads Gromacs EDR file to populate a pandas dataframe
☆33Updated this week
Alternatives and similar repositories for panedr
Users that are interested in panedr are comparing it to the libraries listed below
Sorting:
- An open source Python framework for transition interface and path sampling calculations.☆114Updated 4 months ago
- Physical validation of molecular simulations☆57Updated 2 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- Parallel algorithms for MDAnalysis☆31Updated last year
- Automatic MARTINI parametrization of small organic molecules☆68Updated 4 months ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated last year
- Best Practices article intended for LiveCoMS☆42Updated 5 years ago
- A client interface to the QCArchive Project (read-only image of QCFractal)☆34Updated 2 years ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆101Updated last year
- A comprehensive tool for analyzing liquid solvation structure.☆54Updated 2 months ago
- Python Library for Automating Molecular Simulations☆86Updated this week
- Automatic detection of equilibrated regions of molecular simulations☆17Updated 8 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆30Updated last year
- Python bindings for TNG file format☆13Updated last month
- (outdated) fork of https://gitlab.com/gromacs/gromacs☆53Updated 2 years ago
- MDAnalysis wrapper around Packmol☆33Updated 2 years ago
- Dihedral scanner with wavefront propagation☆34Updated 5 months ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆46Updated last year
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last month
- This library tackles the construction and efficient execution of computational chemistry workflows☆49Updated last year
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆44Updated 4 years ago
- A project (and object) for storing, manipulating, and converting molecular mechanics data.☆79Updated last week
- OpenMM plugin to interface with PLUMED☆68Updated 7 months ago
- Python version of the modified Seminario method code☆16Updated 4 years ago
- ☆61Updated 2 months ago
- An example of how to write a plugin for OpenMM☆31Updated last year
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- a python package for the interfacial analysis of molecular simulations☆93Updated last month