KatherLab / LLMAIx
Document Information Extraction & Anonymization using local LLMs
☆37Updated last week
Alternatives and similar repositories for LLMAIx:
Users that are interested in LLMAIx are comparing it to the libraries listed below
- Clinical text summarization by adapting large language models☆133Updated 6 months ago
- Vector Guideline Comparison for Medical Oncology☆28Updated 8 months ago
- ☆50Updated last year
- A private and secure generative AI tool, based on GPT-4 and deployed for non-clinical use at Dana-Farber Cancer Institute☆59Updated 3 weeks ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆12Updated last year
- For Med-Gemini, we relabeled the MedQA benchmark; this repo includes the annotations and analysis code.☆46Updated 8 months ago
- General tutorials for the setup and use of MedCAT.☆36Updated last month
- MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.☆39Updated 4 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆40Updated 11 months ago
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆82Updated 8 months ago
- Self-verification for LLMs.☆63Updated last year
- Sentence tokenizer for clinical/medical text.☆26Updated 8 months ago
- ☆39Updated last year
- BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.☆48Updated last year
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆159Updated 10 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 10 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆61Updated last year
- Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…☆18Updated last year
- ISMB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"☆48Updated 10 months ago
- This is Clinfo.AI Demo Instruction☆33Updated 6 months ago
- Leveraging☆11Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 3 months ago
- Versatile framework designed to streamline the integration of your models, as well as those sourced from Hugging Face, into complex progr…☆28Updated 2 months ago
- A repository of all code and resources of my published blog articles.☆24Updated 3 weeks ago
- Robust de-identification of medical notes using transformer architectures☆50Updated 2 years ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆30Updated 11 months ago
- ☆79Updated last week
- GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.☆16Updated last year
- This is a RAG implementation using Open Source stack. BioMistral 7B has been used to build this app along with PubMedBert as an embedding…☆64Updated last year