Bioinformatics Retrieval Augmented Digital (BRAD) Assistant - A LLM powered agent for bioinformatics 🤖
☆63May 14, 2025Updated last year
Alternatives and similar repositories for BRAD
Users that are interested in BRAD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software for hypergraph and multi-way network analysis 🌐☆38May 23, 2026Updated 2 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆51Jun 5, 2025Updated last year
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆21Dec 24, 2024Updated last year
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 6 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A single-cell RNA-seq data generative model☆19Jan 11, 2025Updated last year
- R Shiny web-app for integrated metabolic network analysis☆11Aug 11, 2022Updated 3 years ago
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Trends in scientific publishing delays☆11Aug 20, 2021Updated 4 years ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Jul 24, 2026Updated 2 weeks ago
- Read the Meteor tutorials in a minimalist app☆17Jan 7, 2019Updated 7 years ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Updated this week
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- Computing term cooccurrence in MEDLINE☆18Apr 13, 2021Updated 5 years ago
- ☆10Jun 24, 2023Updated 3 years ago
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 5 months ago
- SciMind: A Multimodal Mixture-of-Experts Model for Advancing Pharmaceutical Sciences☆10Aug 15, 2024Updated last year
- BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458☆58Jul 31, 2025Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆10Jun 28, 2025Updated last year
- A new module for Megatron-LM training to enhance motif memory in Genomic☆18Feb 2, 2026Updated 6 months ago
- Package for word stress detection☆11Jan 27, 2023Updated 3 years ago
- ☆25Sep 3, 2024Updated last year
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- Chemical Science 2023: An equivariant generative framework for molecular graph-structure Co-design☆10Jun 18, 2023Updated 3 years ago
- A wrapper script for https://sploitus.com to scrape query results for tools and exploits☆14Mar 3, 2019Updated 7 years ago
- ☆15Oct 7, 2025Updated 10 months ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Building reliable Retrieval Augmented Generation(RAG) AI Architecture☆13Jul 30, 2024Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- HMS LINCS Project Repository☆15Aug 28, 2020Updated 5 years ago
- Hack InOut 2017☆12Oct 14, 2017Updated 8 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- notes on applied computer security☆11Jun 27, 2023Updated 3 years ago