Paperclip — search, read, and analyze 8M+ biomedical papers from the command line
☆187May 22, 2026Updated last month
Alternatives and similar repositories for paperclip
Users that are interested in paperclip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FeNNol Pretrained Models Collection☆21Dec 17, 2025Updated 6 months ago
- R Docker images built with Dev Container Features☆17Jun 19, 2026Updated 2 weeks ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Algorithm for identifying hydrogen bond networks in CG proteins to implement Go-like Martini 3 models☆17Oct 25, 2024Updated last year
- ☆25Sep 3, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Apr 9, 2026Updated 2 months ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Collective variables by artificial neural networks☆11Mar 16, 2022Updated 4 years ago
- ☆35Jun 26, 2026Updated last week
- ☆63May 13, 2026Updated last month
- My collection of tools for interacting with the wikidata database☆17Aug 26, 2025Updated 10 months ago
- Protein prediction models implemented with Modal☆34Jun 21, 2026Updated last week
- ☆11Sep 11, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆14Updated this week
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆43Jun 12, 2026Updated 3 weeks ago
- ☆11Feb 21, 2020Updated 6 years ago
- ☆46Dec 30, 2025Updated 6 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 3 months ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Molecular Dynamics on Google Compute Engine, Colab, AWS (Amazon Web Services) and other Cloud Computing services☆26Oct 18, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simple Python package to calculate ROC AUC with confidence intervals using DeLong’s method☆23Mar 9, 2026Updated 3 months ago
- A basic demo for building a RAG system with Qdrant & Ollama☆17May 9, 2025Updated last year
- A Python package for generating and working with codemeta☆30Mar 18, 2026Updated 3 months ago
- Files that can be accessed concurrently☆13Mar 21, 2026Updated 3 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆48May 11, 2026Updated last month
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- a small library for making powerful JS+CSS transitions☆11Mar 27, 2018Updated 8 years ago
- NCATS Biomedical Translator Reasoners Standard API☆43Jun 25, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A websocket proxy which allows MITM through a third-party websocket connection. Allows programmatically reading and injecting messages.☆16Mar 27, 2026Updated 3 months ago
- Relation extraction for protein to protein interactions to extraction strongly typed PPI relations.. My research topic.. So work in progr…☆16Nov 28, 2022Updated 3 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated 9 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- A template to create your own literature survey engine☆14Jun 22, 2026Updated last week
- Finding mentions and citations to named and implicit research datasets from within the academic literature☆30Jun 14, 2025Updated last year