FoxoTech / methylizeLinks
Python-based Illumina methylation array analysis software
☆16Updated 2 years ago
Alternatives and similar repositories for methylize
Users that are interested in methylize are comparing it to the libraries listed below
Sorting:
- Python-based preprocessing software for Illumina methylation arrays☆42Updated 2 years ago
- Work with trained factor models in Python☆36Updated last year
- Tutorials for multimodal omics data analysis☆19Updated 11 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- Multi-omics factor analysis v2☆56Updated 2 weeks ago
- ☆10Updated last month
- Clinical interpretation of somatic mutations in cancer☆50Updated 11 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆23Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆64Updated last year
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- ☆37Updated 3 weeks ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Updated 3 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Updated 6 years ago
- Scripts for using scanpy☆39Updated 3 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Updated 11 months ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- ☆23Updated 3 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- Universal Single-Cell Genomics Preprocessing package☆48Updated last week
- ☆41Updated 7 months ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17Updated 3 years ago
- A network-based approach for exon set enrichment☆15Updated 6 months ago