Gallery of visualizations and analyses of the Allen Brain Observatory
☆25Aug 10, 2022Updated 3 years ago
Alternatives and similar repositories for brain_observatory_examples
Users that are interested in brain_observatory_examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for analyzing behavioral data for Brain Observatory: Visual Behavior☆26Mar 5, 2026Updated 2 weeks ago
- Computational model reported in: Izquierdo EJ, Beer RD. 2018 From head to tail: a neuromechanical model of forward locomotion in Caenorha…☆15Apr 24, 2021Updated 4 years ago
- Neuronal Network Meanfield Toolbox - official documentation: https://nnmt.readthedocs.io☆15Sep 6, 2023Updated 2 years ago
- Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from n…☆11Jul 28, 2020Updated 5 years ago
- Code for projecting volumetric nifti files to HCP surface and Glasser atlas parcel-wise value extraction☆13May 21, 2023Updated 2 years ago
- pythorcn implementation of a vanilla RNN☆11Oct 17, 2021Updated 4 years ago
- Code and data for "Broken detailed balance and entropy production in the human brain" by Christopher W. Lynn, Eli J. Cornblath, Lia Papad…☆13Nov 23, 2021Updated 4 years ago
- All the action is on the course webpage -->☆30Nov 12, 2024Updated last year
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 5 months ago
- Coding exercises for Neural Data Science at CSHL in 2019☆31May 9, 2020Updated 5 years ago
- course materials for the 2017 Summer Workshop on the Dynamic Brain☆12Jan 4, 2018Updated 8 years ago
- An assortment of graphics utilities☆13Jul 22, 2021Updated 4 years ago
- Convert Intan (rhd or rhs) files to NWB file format☆10Oct 2, 2023Updated 2 years ago
- Tools for analyzing spiking data from single-neuron recodings.☆29Feb 20, 2026Updated last month
- MyST markdown paper template with actions☆14Feb 8, 2023Updated 3 years ago
- Code and data for the book "Case Studies in Neural Data Analysis"☆37May 27, 2017Updated 8 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- Uncovering cell identity genes using differential stability of expression in single cells.☆14Jul 2, 2024Updated last year
- Analysis code for the OpenScope Credit Assignment project.☆13Jul 9, 2024Updated last year
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Python package providing mesoscale connectivity models for mouse.☆39Apr 3, 2024Updated last year
- This code package is for the Tensor-Maximum-Entropy (TME) method. This method generates random surrogate data that preserves a specified …☆18Sep 9, 2017Updated 8 years ago
- Matlab codepack for performing dimensionality reduction on neural data using TD-GPFA or GPFA.☆22Jul 30, 2017Updated 8 years ago
- ☆11Nov 12, 2025Updated 4 months ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- A large database of artificial neural network statistics during training☆15Dec 8, 2020Updated 5 years ago
- Realtime simulation and visualization of neural dynamics of a full nervous system (C. elegans).☆38Aug 10, 2021Updated 4 years ago
- A series of simulation codes used to emulate quantum-like networks in the simulation of emergent adaptive behavior, such as network sync…☆13Mar 12, 2026Updated last week
- Website for the MIT/Harvard Computational Neuroscience Journal Club☆11Apr 7, 2025Updated 11 months ago
- Python code to connect a microscope, or another USB camera, to Linux and show its video stream.☆13Sep 9, 2025Updated 6 months ago
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated 2 weeks ago
- Code for "A Unified Theory of Early Visual Representations from Retina to Cortex through Anatomically Constrained Deep CNNs", ICLR 2019☆49Jan 7, 2019Updated 7 years ago
- Neuroimgaing data processing pipelines used in the lab☆21Jul 23, 2019Updated 6 years ago
- IBL core shared libraries☆67Updated this week
- This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linea…☆24Dec 5, 2025Updated 3 months ago
- CMCI textbook 2, for ImageJ macro course☆19Nov 6, 2017Updated 8 years ago
- Compact hyperdrive for up to 16 independently movable electrodes☆18Aug 25, 2019Updated 6 years ago
- Brain Cell Type Specific Gene Expression Analysis☆17Dec 27, 2023Updated 2 years ago
- This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.☆61Nov 25, 2025Updated 3 months ago