Alternatives and similar repositories for CuBIDS

Users that are interested in CuBIDS are comparing it to the libraries listed below

• ReproNim / reproin
  A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
  ☆50Updated 8 months ago
• nipy / dmriprep
  MOVED TO https://github.com/nipreps/dmriprep
  ☆17Updated 3 years ago
• inm7 / jubrain-anatomy-toolbox
  JuBrain Anatomy Toolbox
  ☆22Updated 6 years ago
• danjgale / surfplot
  A package for publication-ready brain surface figures
  ☆69Updated 2 months ago
• HBClab / NiBetaSeries
  Nipype implementation of BetaSeries Correlations (Beta)
  ☆35Updated 2 years ago
• LewisNeuro / HRAN
  We created a model to remove physiological noise in fast fMRI without external reference signals.
  ☆12Updated 6 years ago
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆39Updated 10 months ago
• miykael / parcellation_fragmenter
  Fragments FreeSurfer parcellation annotation in N-equal sized parcels
  ☆29Updated 5 years ago
• transatlantic-comppsych / fmriprep_qa_guide
  Rough draft of a guide for reviewing fmriprep's QA outputs
  ☆34Updated 3 years ago
• NILAB-UvA / bidsify
  Tool to convert raw MRI datasets to BIDS-compatible datasets
  ☆35Updated 3 years ago
• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆57Updated last year
• sjburwell / fmriprep_denoising
  Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-d…
  ☆15Updated 4 years ago
• elizabethbeard / mriqception
  A repo for tools to aggregate public MRIQC data (Neurohackademy 2019)
  ☆27Updated 5 years ago
• TomMaullin / BLMM
  This repository contains all code for the BLMM toolbox.
  ☆20Updated last year
• compneuro-ncu / fmridenoise
  Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.
  ☆48Updated 2 years ago
• pGarciaS / PREEMACS
  PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface
  ☆17Updated last year
• demidenm / PyReliMRI
  Python-based Reliability in MRI: Calculating Group level and Individual Level Similarity between runs and sessions.
  ☆37Updated 3 months ago
• AkiNikolaidis / PyBASC
  Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique
  ☆26Updated 6 years ago
• CPernet / spmup
  SPM tools to get the best of mass univariate analyses
  ☆43Updated last year
• PennLINC / qsirecon
  Reconstruction of preprocessed q-space images (dMRI)
  ☆18Updated last month
• poldracklab / ds003-post-fMRIPrep-analysis
  An exemplary task analysis workflow to run on OpenNeuro's ds000003 data, after preprocessing with fMRIPrep
  ☆32Updated 4 years ago
• DCAN-Labs / abcd-hcp-pipeline
  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
  ☆57Updated 3 months ago
• bids-standard / bids-matlab
  MATLAB / Octave tools for BIDS datasets
  ☆58Updated last week
• PennLINC / AtlasPack
  Combined cortical/subcortical atlases for xcp-d and qsiprep
  ☆25Updated last year
• miykael / atlasreader
  Python interface for generating coordinate tables and region labels from statistical MRI images
  ☆113Updated last week
• sina-mansour / Cerebro_Viewer
  A pythonic 3D viewer to visualize and plot brains and neuroimaging data
  ☆36Updated last year
• trendscenter / gift-bids
  ☆11Updated last month
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆67Updated last year
• Dynamap / BIDS_Manager
  BIDS Manage is a software aiming at importing and organising data in BIDS standard
  ☆10Updated 2 years ago
• cmig-research-group / cmig_tools_deprecated
  Public repository of cmig_tools including FEMA
  ☆24Updated last year