uc-cdis / gen3sdk-pythonLinks
Gen3 SDK for Python
☆16Updated this week
Alternatives and similar repositories for gen3sdk-python
Users that are interested in gen3sdk-python are comparing it to the libraries listed below
Sorting:
- Python library & CLI to create, view and edit PFB files☆12Updated 2 months ago
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆40Updated last year
- Schema and generated objects for biolink data model and upper ontology☆205Updated 2 weeks ago
- Feature Annotation Location Description Ontology☆34Updated 5 years ago
- Ontology for consent codes and data use requirements☆67Updated 3 years ago
- AmiGO is the public interface for the Gene Ontology.☆31Updated last month
- A repository for the schemas used for the Data Repository Service.☆63Updated last month
- An app store for scientific workflows, tools, notebooks, and services☆131Updated this week
- An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed☆17Updated 5 years ago
- Data Ingestion Pipeline for Monarch☆57Updated 2 years ago
- Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.☆24Updated last year
- Basic and Advanced OBO Graphs: specification and reference implementation☆68Updated last month
- Integrated OBO ontology store☆48Updated 2 months ago
- This repo is for the metadata schemas associated with the HCA☆67Updated this week
- API for linked biological knowledge☆66Updated 3 years ago
- NCATS Biomedical Translator Reasoners Standard API☆39Updated this week
- Repository for the GA4GH phenopacket schema☆89Updated last month
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated this week
- An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology☆141Updated last week
- Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (…☆58Updated last year
- Deploy Gen3 using Docker compose☆14Updated 7 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 3 months ago
- A language server for Common Workflow Language☆66Updated last year
- Documentation for Solor Knowledge Architecture and Knowledge Management Environment☆17Updated 3 years ago
- Data dictionary for the GDC☆54Updated 3 weeks ago
- A PostgreSQL foreign data wrapper for VCF files.☆18Updated 8 years ago
- Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide☆24Updated last week
- wrapper for multiple linkml storage engines☆22Updated 2 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆32Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆60Updated last week