uc-cdis / gen3sdk-pythonLinks
Gen3 SDK for Python
☆16Updated this week
Alternatives and similar repositories for gen3sdk-python
Users that are interested in gen3sdk-python are comparing it to the libraries listed below
Sorting:
- Python library & CLI to create, view and edit PFB files☆12Updated 3 months ago
- Feature Annotation Location Description Ontology☆34Updated 5 years ago
- A repository for the schemas used for the Data Repository Service.☆63Updated this week
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆40Updated last year
- AmiGO is the public interface for the Gene Ontology.☆31Updated last week
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 4 months ago
- Ontology for consent codes and data use requirements☆67Updated 3 years ago
- Schema and generated objects for biolink data model and upper ontology☆209Updated last week
- Repository for the GA4GH phenopacket schema☆90Updated last month
- Deploy Gen3 using Docker compose☆14Updated 8 months ago
- Web-component for creating & showing VSM-sentences — Visual Syntax Method☆30Updated 4 years ago
- LLM-driven curation assist tool☆98Updated 2 weeks ago
- Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.☆24Updated last year
- An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed☆17Updated 5 years ago
- Integrated OBO ontology store☆48Updated last month
- 🔥 FHIR 101 - A Practical Guide☆42Updated 5 years ago
- Documentation for Solor Knowledge Architecture and Knowledge Management Environment☆17Updated 3 years ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆155Updated 5 months ago
- Graph-based modeling environment for biology, including prototype editor and services☆40Updated 2 weeks ago
- Data transformation framework for LinkML data models☆59Updated this week
- A PostgreSQL foreign data wrapper for VCF files.☆18Updated 8 years ago
- This repo is for the metadata schemas associated with the HCA☆67Updated this week
- GA4GH Variation Representation Python Implementation☆60Updated last week
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆32Updated last year
- A motley crew of agents developed by the Monarch Initiative☆21Updated last week
- Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide☆26Updated this week
- A visualization tool for Systems-Level Interactive Data Exploration☆12Updated 3 years ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆26Updated last month
- API for linked biological knowledge☆66Updated 3 years ago
- Data Ingestion Pipeline for Monarch☆57Updated 2 years ago