Alternatives and similar repositories for gen3sdk-python

Users that are interested in gen3sdk-python are comparing it to the libraries listed below

• uc-cdis / pypfb
  Python library & CLI to create, view and edit PFB files
  ☆11Updated last week
• monarch-initiative / loinc2hpo
  Java library to map LOINC-encoded test results to Human Phenotype Ontology
  ☆31Updated last year
• OBF / FALDO
  Feature Annotation Location Description Ontology
  ☆34Updated 5 years ago
• ga4gh / data-repository-service-schemas
  A repository for the schemas used for the Data Repository Service.
  ☆61Updated 3 months ago
• EBISPOT / DUO
  Ontology for consent codes and data use requirements
  ☆66Updated 2 years ago
• elimuinformatics / vcf2fhir
  vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
  ☆40Updated 9 months ago
• linkml / schemasheets
  Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
  ☆45Updated last month
• TheJacksonLaboratory / hpo-web
  a web application to search and navigate the Human Phenotype Ontology (HPO)
  ☆14Updated last month
• uc-cdis / compose-services
  Deploy Gen3 using Docker compose
  ☆14Updated 4 months ago
• INCATools / ubergraph
  Integrated OBO ontology store
  ☆47Updated last month
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated last month
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• HL7 / genomics-reporting
  Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide
  ☆23Updated this week
• TheJacksonLaboratory / loinc2hpoAnnotation
  loinc2hpo Annotation Data
  ☆24Updated 2 years ago
• phenopackets / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆87Updated 9 months ago
• cancerDHC / ccdhmodel
  CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
  ☆16Updated 3 years ago
• geneontology / amigo
  AmiGO is the public interface for the Gene Ontology.
  ☆31Updated this week
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated 9 months ago
• ApolloDev / apollo-sv
  Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposi…
  ☆11Updated 6 months ago
• monarch-initiative / koza
  Data transformation framework for LinkML data models
  ☆53Updated 2 weeks ago
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆20Updated 6 years ago
• monarch-initiative / monarch-disease-ontology-RETIRED
  THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
  ☆17Updated 4 years ago
• INCATools / obographviz
  Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
  ☆26Updated 4 months ago
• geneontology / noctua
  Graph-based modeling environment for biology, including prototype editor and services
  ☆40Updated last year
• inab / WfExS-backend
  Workflow Execution Service Backend
  ☆18Updated 2 weeks ago
• ga4gh-beacon / specification
  GA4GH Beacon specification.
  ☆32Updated 2 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated this week
• monarch-initiative / HpoTextMining
  Perform text mining for identification of HPO terms in free text from scientific publication.
  ☆12Updated 11 months ago
• biolink / biolink-model
  Schema and generated objects for biolink data model and upper ontology
  ☆197Updated last week
• monarch-initiative / GENO-ontology
  Repository for representing genotypes and their association with phenotypes
  ☆18Updated last year