Alternatives and similar repositories for CUSUM

Users that are interested in CUSUM are comparing it to the libraries listed below

• shubhamchandak94 / nanopore_dna_storage
  DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration
  ☆22Updated 2 years ago
• voyn / transalyzer
  Matlab GUI based package for nanopore signal analysis
  ☆25Updated last month
• lh3 / dna-nn
  Model and predict short DNA sequence features with neural networks
  ☆80Updated 6 years ago
• realbigws / cwDTW
  Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals
  ☆20Updated 7 years ago
• chrishah / maker-docker
  Docker image as base for building full MAKER image
  ☆11Updated 3 years ago
• ShujiaHuang / cmdbtools
  Command line tools for CMDB varaints browser
  ☆23Updated last year
• lrslab / nanoCEM
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
  ☆17Updated 3 months ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• liqingwen98 / BaseNet
  BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding
  ☆13Updated 5 months ago
• MasaakiU / MultiplexNanopore
  ☆16Updated 10 months ago
• cschin / DCNet
  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
  ☆69Updated 7 years ago
• nygctech / PySeq2500
  Control an Illumina HiSeq 2500 System
  ☆20Updated last year
• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆13Updated 4 months ago
• guangzhaocs / SegPore
  SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
  ☆13Updated 2 weeks ago
• ZKI-PH-ImageAnalysis / seq2squiggle
  End-to-end simulation of nanopore sequencing signals with feed-forward transformers
  ☆17Updated 2 months ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated last year
• kingaa / ouch
  Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
  ☆16Updated 8 months ago
• shenwei356 / easy_qsub
  Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
  ☆29Updated 2 years ago
• mendessoares / MMinte
  ☆16Updated 3 years ago
• painyeph / FishersExactTest
  A fast, precise, pure Python implementation of Fisher's exact test
  ☆12Updated 8 years ago
• j-levy / bwa-gasal2
  BWA-MEM program accelerated with the GASAL2 library
  ☆19Updated 6 years ago
• WGLab / DeepMod
  DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
  ☆104Updated 2 years ago
• nshomron / hoobari
  Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.
  ☆14Updated 6 years ago
• marcpaga / nanopore_benchmark
  ☆30Updated 6 months ago
• crohrandt / nanopore_simulation
  Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
  ☆19Updated 8 years ago
• KleistLab / NanoPore_dRNASeq
  Codes and results from ONT dRNA benchmarking
  ☆11Updated 2 years ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 4 years ago
• Shuhua-Group / Chinese-Pangenome-Consortium-Phase-I
  ☆71Updated last year
• sandialabs / TIGER
  Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…
  ☆19Updated 5 months ago
• PengNi / deepsignal2
  ☆29Updated 2 years ago