shadowk29 / CUSUMLinks
Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data
☆14Updated 5 years ago
Alternatives and similar repositories for CUSUM
Users that are interested in CUSUM are comparing it to the libraries listed below
Sorting:
- Model and predict short DNA sequence features with neural networks☆77Updated 6 years ago
- RNA-Seq☆24Updated 7 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Updated 5 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Updated 9 years ago
- Tools used to analyze data from nanopore-based experiments.☆30Updated 10 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆19Updated 6 years ago
- principal components population genetics analysis on linux☆19Updated 4 years ago
- Matlab GUI based package for nanopore signal analysis☆24Updated 7 years ago
- Nanopore basecalling and consensus decoding☆46Updated 3 years ago
- A local realigner around InDels for MethylSeq data☆12Updated 9 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆19Updated 7 months ago
- ☆15Updated 7 years ago
- ☆21Updated 5 months ago
- Experimental String Graph construction and processing☆27Updated 2 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- Pan-genome Seed Index☆20Updated 7 months ago
- Sequential Tree Sampler for online phylogenetics☆16Updated 6 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 5 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆39Updated 4 years ago
- PanTools☆30Updated 6 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Updated this week
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Updated 6 years ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Updated 7 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆16Updated last month
- ☆23Updated 4 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Updated 9 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago