pfnet-research / BMI219-2017-ProteinFoldingLinks
UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)
☆16Updated 8 years ago
Alternatives and similar repositories for BMI219-2017-ProteinFolding
Users that are interested in BMI219-2017-ProteinFolding are comparing it to the libraries listed below
Sorting:
- A molecule generation benchmarking platform☆13Updated 7 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)☆14Updated 7 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 5 years ago
- ☆25Updated 3 years ago
- BayesGrad: Explaining Predictions of Graph Convolutional Networks☆63Updated 3 years ago
- Experiments in protein folding through language modeling☆10Updated 3 years ago
- Molecular dynamics trajectory analysis in Tensorflow☆38Updated 8 years ago
- Implementation of IJCAI15 cascade cnn and LSTM for protein secondary structure prediction☆37Updated 8 years ago
- ☆34Updated 4 years ago
- ☆26Updated 2 years ago
- Molecular Generation for Desired Transcriptome Changes with Adversarial Autoencoders☆53Updated 5 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 6 years ago
- Protein contacts prediction using deep learning models☆77Updated 6 years ago
- Novel molecules generation with LSTM☆17Updated 4 years ago
- A mini-framework to build and train neural networks for molecular biology.☆10Updated 7 years ago
- Generation and Classification of Drug Like molecule usings Neural Networks☆66Updated 6 years ago
- Code for our paper Re-balancing Variational Autoencoder Loss for Molecule Sequence Generation.☆11Updated 2 years ago
- https://moalquraishi.wordpress.com/2018/12/09/alphafold-casp13-what-just-happened/☆50Updated 6 years ago
- Similarity Ensemble Approach with deep learning substance fingerprints☆61Updated 9 years ago
- Molecular AutoEncoder in PyTorch☆90Updated 5 years ago
- Interpreting graph convolutional filters of target prediction network☆48Updated 6 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Code for the results of the Paper:☆21Updated 7 years ago
- An experimental package for deep learning for molecular docking☆20Updated 5 years ago
- Universal Transforming Geometric Network for protein structure prediction.☆8Updated 5 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Updated 7 years ago
- BoxNet implemented in TensorFlow and all current training data☆32Updated 6 years ago
- A Deep-learning based dOcking decoy eValuation mEthod☆57Updated 2 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Updated 4 years ago