molstar / VSCoding-SequenceLinks
VSCode Extension for interactively visualising protein structure data in the editor
☆110Updated 8 months ago
Alternatives and similar repositories for VSCoding-Sequence
Users that are interested in VSCoding-Sequence are comparing it to the libraries listed below
Sorting:
- MoleculeKit: Your favorite molecule manipulation kit☆226Updated 3 weeks ago
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆141Updated 6 months ago
- mmCIF Core Access Library☆47Updated this week
- Protein and nucleic acid validation service☆83Updated last year
- Python interface for the RCSB PDB search API.☆63Updated 4 months ago
- Simple package for fast molecular similarity searches☆141Updated 3 months ago
- A Python library for structural cheminformatics☆102Updated 3 months ago
- An interoperable Python framework for biomolecular simulation.☆119Updated this week
- Make a bunch of molecules☆96Updated 8 months ago
- Molecular bloom filter tool☆121Updated 3 months ago
- Calculation of interatomic interactions in molecular structures☆104Updated 11 months ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆124Updated 2 years ago
- ☆126Updated 9 years ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆112Updated 9 months ago
- Extracting medicinal chemistry intuition via preference machine learning☆110Updated last year
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.☆84Updated this week
- Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse☆196Updated 6 months ago
- Software for biomolecular electrostatics and solvation calculations☆106Updated 11 months ago
- A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆38Updated last year
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Updated last year
- An application for configuring and running simulations with OpenMM☆71Updated 3 weeks ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆90Updated 2 months ago
- ☆124Updated 6 years ago
- Peptide optimization with Machine Learning☆76Updated 2 years ago
- ☆69Updated last month
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆150Updated 5 months ago
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆61Updated 5 months ago
- Modeling with limited data☆59Updated last month
- Trusted force field files for gromacs☆56Updated 9 months ago