molstar / VSCoding-SequenceLinks
VSCode Extension for interactively visualising protein structure data in the editor
☆119Updated last year
Alternatives and similar repositories for VSCoding-Sequence
Users that are interested in VSCoding-Sequence are comparing it to the libraries listed below
Sorting:
- Calculation of interatomic interactions in molecular structures☆118Updated last year
- Python interface for the RCSB PDB search API.☆65Updated 10 months ago
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆148Updated 11 months ago
- Make a bunch of molecules☆97Updated last year
- ☆135Updated 9 years ago
- MoleculeKit: Your favorite molecule manipulation kit☆233Updated this week
- An interoperable Python framework for biomolecular simulation.☆145Updated this week
- mmCIF Core Access Library☆50Updated this week
- Simple package for fast molecular similarity searches☆161Updated this week
- A Python library for structural cheminformatics☆103Updated 2 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆69Updated 3 months ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆138Updated 2 years ago
- Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse☆203Updated last year
- Protein and nucleic acid validation service☆93Updated last year
- A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆38Updated 2 years ago
- Code and resources for the EPSRC BioSimSpace project.☆78Updated 5 months ago
- ☆67Updated 9 months ago
- The Binding Affinity Tool (BAT.py) is a fully automated tool for absolute binding free energy (ABFE) and relative binding free energy (RB…☆219Updated last week
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆74Updated 3 months ago
- Software for biomolecular electrostatics and solvation calculations☆123Updated last year
- A Graph-Convolutional Deep Neural Network for predicting electrostatic potential surfaces☆97Updated 2 years ago
- Peptide optimization with Machine Learning☆78Updated 3 years ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆128Updated 3 weeks ago
- The MinHashed Atom Pair fingerprint of radius 2☆120Updated 2 years ago
- Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.☆93Updated 2 months ago
- GenMol is a generative AI model for creating novel molecules. It utilizes masked discrete diffusion and fragment-based generation to crea…☆151Updated 3 weeks ago
- A generic mechanism for describing views used in molecular visualizations☆57Updated 2 weeks ago
- An application for configuring and running simulations with OpenMM☆76Updated 3 months ago
- ☆135Updated 7 years ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 7 months ago