khanlab / snakebidsLinks
Snakemake + BIDS
☆19Updated 3 weeks ago
Alternatives and similar repositories for snakebids
Users that are interested in snakebids are comparing it to the libraries listed below
Sorting:
- Tools for mesh surface-based operations☆37Updated 6 months ago
- Open resource exchange platform for non-human primate neuroimaging☆22Updated 5 months ago
- A package for publication-ready brain surface figures☆66Updated last year
- Diffuse Cluster Estimation and Regression. A de-noising tool.☆19Updated 3 years ago
- The TemplateFlow Archive - A DataLad super-dataset☆88Updated last month
- This repository contains all code for the BLMM toolbox.☆20Updated last year
- Fragments FreeSurfer parcellation annotation in N-equal sized parcels☆28Updated 5 years ago
- Python implementation of Wu et al (2018)'s registration fusion☆27Updated 4 years ago
- Rough draft of a guide for reviewing fmriprep's QA outputs☆32Updated 3 years ago
- Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.☆48Updated 2 years ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆43Updated last week
- Load fMRIprep confounds in python☆37Updated 3 years ago
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆50Updated 4 months ago
- Toolbox for structural and functional brain connectivity reconstruction.☆17Updated 10 months ago
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆59Updated last week
- Generate and run SLURM jobs on HPCs☆12Updated last month
- multi atlas transfer tools for neuroimaging (maTT)☆65Updated 10 months ago
- Reconstruction of preprocessed q-space images (dMRI)☆12Updated 3 weeks ago
- MOVED TO https://github.com/nipreps/dmriprep☆17Updated 2 years ago
- BigBrainWarp☆27Updated 3 months ago
- Nuisance removal tool for fMRI data☆57Updated last year
- A repo for tools to aggregate public MRIQC data (Neurohackademy 2019)☆26Updated 5 years ago
- Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.☆28Updated last week
- JuBrain Anatomy Toolbox☆22Updated 6 years ago
- A pythonic 3D viewer to visualize and plot brains and neuroimaging data☆35Updated last year
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆101Updated this week
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆85Updated 2 weeks ago
- A statistics and context decoding toolbox for neuroimaging.☆109Updated 11 months ago
- BIDS app wrapping recon-all from FreeSurfer☆43Updated last week
- Python interface for generating coordinate tables and region labels from statistical MRI images☆107Updated last month