khanlab / snakebidsLinks
Snakemake + BIDS
☆21Updated last week
Alternatives and similar repositories for snakebids
Users that are interested in snakebids are comparing it to the libraries listed below
Sorting:
- A package for publication-ready brain surface figures☆67Updated 3 weeks ago
- Diffuse Cluster Estimation and Regression. A de-noising tool.☆19Updated 3 years ago
- This repository contains all code for the BLMM toolbox.☆20Updated last year
- Tools for mesh surface-based operations☆38Updated 9 months ago
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆49Updated 7 months ago
- Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.☆48Updated 2 years ago
- Discussions and suggestions of backwards incompatible changes to BIDS☆12Updated last year
- Rough draft of a guide for reviewing fmriprep's QA outputs☆34Updated 3 years ago
- Open resource exchange platform for non-human primate neuroimaging☆22Updated 2 weeks ago
- Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.☆28Updated this week
- Python interface for generating coordinate tables and region labels from statistical MRI images☆113Updated this week
- MOVED TO https://github.com/nipreps/dmriprep☆17Updated 2 years ago
- Because we all need pointers when it comes to make our code better.☆17Updated 3 months ago
- Fragments FreeSurfer parcellation annotation in N-equal sized parcels☆28Updated 5 years ago
- A lightweight package to plot brain surfaces with Python.☆44Updated 2 years ago
- Python-based Reliability in MRI: Calculating Group level and Individual Level Similarity between runs and sessions.☆37Updated 2 months ago
- Python implementation of Wu et al (2018)'s registration fusion☆27Updated 4 years ago
- Load fMRIprep confounds in python☆38Updated 3 years ago
- Post-processing of fMRIPrep, NiBabies, and HCP outputs☆105Updated this week
- ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data☆106Updated this week
- A repo for tools to aggregate public MRIQC data (Neurohackademy 2019)☆26Updated 5 years ago
- a BIDS app for pseudo-anonymization of neuroimaging data☆53Updated last month
- JuBrain Anatomy Toolbox☆22Updated 6 years ago
- A BIDS App for minimal preprocessing using the HCP Pipelines☆37Updated 2 months ago
- Nuisance removal tool for fMRI data☆57Updated last year
- The TemplateFlow Archive - A DataLad super-dataset☆93Updated last month
- For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of sp…☆19Updated 9 months ago
- Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity☆56Updated last year
- A pythonic 3D viewer to visualize and plot brains and neuroimaging data☆36Updated last year
- Probabilistic Threshold-Free Cluster Enhancement of Neuroimages☆41Updated 2 years ago