mims-harvard / crankLinks
Prioritizing network communities
☆31Updated 5 years ago
Alternatives and similar repositories for crank
Users that are interested in crank are comparing it to the libraries listed below
Sorting:
- ☆19Updated last year
- OhmNet: Representation learning in multi-layer graphs☆84Updated 5 years ago
- ☆37Updated 8 years ago
- ☆20Updated 5 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆113Updated 3 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆27Updated 3 months ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆32Updated 2 years ago
- ☆57Updated 6 years ago
- markov clustering in python☆175Updated 4 years ago
- ☆20Updated 5 years ago
- Hierarchical graph clustering☆38Updated 7 years ago
- ☆50Updated 6 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- ☆29Updated 8 years ago
- Tools for building and manipulating graphs in Python☆46Updated last week
- ☆72Updated 2 years ago
- Random Walk with Restart on Multiplex and Heterogeneous Biological Networks☆37Updated 5 years ago
- Gene ontology (GO) semantic similarity library for Python☆24Updated 7 years ago
- code for Gogleva et al manuscript☆46Updated 3 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆29Updated 3 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- ☆22Updated 2 weeks ago
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 9 months ago
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆34Updated last year
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆33Updated 5 years ago
- Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bi…☆228Updated 5 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated last month