jianlin-cheng / CryoTransformer
A transformer model for picking protein particles in cryo-EM images
☆32Updated 6 months ago
Related projects: ⓘ
- The programs of creating cryo-EM particle picking datasets☆60Updated last year
- A dataset of labeled virus particles in cryo-EM micrographs (images) for training and testing machine learning methods of virus particle …☆25Updated 8 months ago
- deep structural disentanglement☆32Updated 2 months ago
- Automatic atomic model building program for cryo-EM maps☆115Updated 2 months ago
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆32Updated last year
- ☆42Updated last month
- ☆23Updated last month
- Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning☆16Updated 2 months ago
- A curated list of awesome computational cryo-EM methods.☆92Updated 3 weeks ago
- Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions☆13Updated 2 years ago
- Rapidly simulate realistic cryo-EM particles☆13Updated last year
- The Swiss Army Knife for Editing Relion .STAR Files☆19Updated 2 months ago
- Utilities to help cryoEM data analysis☆20Updated 3 years ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆18Updated 2 weeks ago
- Generates synthetic datasets for Cryo-Electron Tomography☆19Updated last month
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆10Updated last year
- Useful aliases and startup settings for ChimeraX☆24Updated last week
- Python scripts for easy RELION STAR file manipulation.☆20Updated last month
- Manipulate and mine Relion .star files☆17Updated last month
- ☆22Updated last week
- ☆18Updated 2 months ago
- Graphical user interface to integrate cryoEM flexibility analyses with ChimeraX☆21Updated 2 weeks ago
- DeepMainmast☆10Updated last month
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆26Updated last week
- Sparse Fourier Backpropagation in Cryo-EM Reconstruction☆11Updated 9 months ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆15Updated last year
- The programs for preprocessing cryo-EM density maps for machine learning☆21Updated 3 weeks ago
- STAR file I/O in Python☆44Updated last week
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆20Updated 6 months ago
- ☆9Updated 3 years ago