Alternatives and similar repositories for FradNMI

Users that are interested in FradNMI are comparing it to the libraries listed below

• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆44Updated last year
• RL4M / KeAP
  An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning
  ☆29Updated 2 years ago
• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆70Updated last year
• chao1224 / GeoSSL
  GeoSSL: Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching, ICLR'23 (https://openreview.net/forum?id=CjTHVo1…
  ☆47Updated 2 years ago
• KyGao / Mol-StrucTok
  Serializing molecule 3D structures
  ☆14Updated last year
• schwallergroup / mhnn
  Molecular Hypergraph Neural Network
  ☆43Updated 5 months ago
• bowen-gao / ProFSA
  [ICLR 2024] ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment
  ☆14Updated last year
• smiles724 / Molformer
  ☆96Updated 6 months ago
• myprecioushh / ZeroBind
  ☆26Updated last year
• biomed-AI / STAMP-DPI
  ☆31Updated 3 years ago
• jiaxianyan / BioMiner
  A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature
  ☆63Updated 5 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆37Updated last year
• danielflamshep / xyztransformer
  coming soon
  ☆28Updated 2 years ago
• chao1224 / NeuralMD
  NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025
  ☆20Updated last month
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆44Updated last month
• zaixizhang / DrugGPS_ICML23
  Implementation of ICML23 paper "Learning Subpocket Prototypes for Generalizable Structure-based Drug Design"
  ☆30Updated last year
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆97Updated 11 months ago
• DeepGraphLearning / CGCF-ConfGen
  Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)
  ☆22Updated 4 years ago
• juanniwu / t-SMILES
  ☆39Updated 8 months ago
• smiles724 / ProtMD
  ☆65Updated 6 months ago
• smiles724 / GNN-Bottleneck
  ☆41Updated 6 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆100Updated 2 years ago
• jiaxianyan / DeltaDock
  ☆27Updated last year
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆68Updated 9 months ago
• chao1224 / MoleculeSDE
  A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining, ICML'23
  ☆33Updated last year
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆134Updated 5 months ago
• shehzaidi / pre-training-via-denoising
  Official implementation of pre-training via denoising for TorchMD-NET
  ☆98Updated 2 years ago
• tencent-ailab / MDM
  MDM
  ☆56Updated last year
• zhengkangjie / ESM-AA
  ☆76Updated 10 months ago