shehzaidi / pre-training-via-denoisingLinks
Official implementation of pre-training via denoising for TorchMD-NET
☆90Updated 2 years ago
Alternatives and similar repositories for pre-training-via-denoising
Users that are interested in pre-training-via-denoising are comparing it to the libraries listed below
Sorting:
- GeoSSL: Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching, ICLR'23 (https://openreview.net/forum?id=CjTHVo1…☆45Updated last year
- MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation☆60Updated 11 months ago
- Implementation of ICML2023 paper : Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D☆47Updated last year
- This repo contains the codes for our paper: Molecule Generation by Principal Subgraph Mining and Assembling.☆40Updated last year
- RetroBridge: Markov Bridge Model for Retrosynthesis Planning☆30Updated last year
- Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023☆120Updated last year
- A GFlowNet with a chemical synthesis action space.☆63Updated 4 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 10 months ago
- Papers about Structure-based Drug Design (SBDD)☆114Updated 6 months ago
- Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"☆67Updated last year
- ☆56Updated 2 years ago
- A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining, ICML'23☆32Updated last year
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆108Updated last year
- Official repository for MolCRAFT series☆96Updated 2 weeks ago
- generative model for drug discovery☆59Updated last year
- Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation☆47Updated last year
- Implementation for ICLR2024 Oral paper "Unified Generative Modeling of 3D Molecules with Bayesian Flow Networks"☆53Updated last year
- ☆56Updated 6 months ago
- [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models☆44Updated 9 months ago
- An E(3) Equivariant Variational Autoencoder for Molecular Linker Design☆47Updated 2 years ago
- [AAAI 2023] The implementation for the paper "Energy-Motivated Equivariant Pretraining for 3D Molecular Graphs"☆34Updated 9 months ago
- GEOM: Energy-annotated molecular conformations☆227Updated 3 years ago
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆46Updated 3 years ago
- The official implementation of dual-view molecule pre-training.☆41Updated 3 years ago
- Pose checks for 3D Structure-based Drug Design methods☆82Updated 7 months ago
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆40Updated 9 months ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆30Updated 9 months ago
- MDM☆53Updated last year
- ☆64Updated last week
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated last year