BioDSA: Framework for Vibe Prototyping of AI Agents for Biomedicine
☆49Feb 12, 2026Updated last month
Alternatives and similar repositories for BioDSA
Users that are interested in BioDSA are comparing it to the libraries listed below
Sorting:
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆27Mar 10, 2025Updated last year
- TrialPanorama: Developing Large Language Models for Clinical Research Using One Million Clinical Trials☆25Dec 26, 2025Updated 2 months ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆18Dec 24, 2024Updated last year
- AIONER☆65Jul 25, 2024Updated last year
- ☆31Feb 6, 2026Updated last month
- ☆30Apr 26, 2025Updated 10 months ago
- ☆12Oct 22, 2021Updated 4 years ago
- The Clinical Trials Knowledge Graph☆67Mar 9, 2023Updated 3 years ago
- ☆43May 17, 2025Updated 10 months ago
- To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical re…☆11Jul 30, 2025Updated 7 months ago
- PiFlow: Principle-aware Scientific Discovery with Multi-Agent Collaboration☆42Jan 7, 2026Updated 2 months ago
- Official Repository for paper "Ontology-Free General-Domain Knowledge Graph-to-Text Generation Dataset Synthesis using Large Language Mod…☆15Nov 25, 2024Updated last year
- A Python pipeline tool and plugin ecosystem for processing technical documents. Process papers from arXiv, SemanticScholar, PDF, with GRO…☆54Mar 17, 2025Updated last year
- Preparing for ML Interviews.☆53Jan 12, 2026Updated 2 months ago
- A platform for Interactive AI-assisted Hypothesis Generation [ACL 2025]☆28Aug 18, 2025Updated 7 months ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆77May 10, 2024Updated last year
- Simulation and optimization of cell clusters.☆12Aug 25, 2025Updated 6 months ago
- MICCAI 2023: Morphology-inspired Unsupervised Gland Segmentation via Selective Semantic Grouping☆10Mar 5, 2026Updated 2 weeks ago
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Jun 26, 2024Updated last year
- monae: multi-modal single-cell integration and imputation☆13Sep 13, 2024Updated last year
- [ICCV2025] Constructing Ophthalmic MLLM for Positioning-diagnosis Collaboration Through Clinical Cognitive Chain Reasoning☆23Nov 13, 2025Updated 4 months ago
- obesity challenge☆13May 12, 2018Updated 7 years ago
- python code for BRLTM model☆14Jan 17, 2021Updated 5 years ago
- An information extraction system for free-text eligibility criteria☆38Jan 12, 2019Updated 7 years ago
- LLM Embeddings for ICD 10 Data☆64Dec 10, 2024Updated last year
- ☆33Nov 30, 2023Updated 2 years ago
- A graphical editor for directed graphs used for Abstract Meaning Representation (AMR)☆13Feb 25, 2026Updated 3 weeks ago
- Repository of the paper ''CritiQ: Mining Data Quality Criteria from Human Preferences". Code for CritiQ Flow & Training CritiQ Scorer.☆23Dec 11, 2025Updated 3 months ago
- Repo for our work "Systematic Evaluation of Large Vision-Language Models for Surgical Artificial Intelligence"☆19Jun 2, 2025Updated 9 months ago
- ☆11Jan 12, 2022Updated 4 years ago
- Gravity project FHIR implementation guide covering social determinants of health, including data capture, recording SDOH issues and makin…☆18Feb 13, 2026Updated last month
- Scanomatic☆11Oct 12, 2023Updated 2 years ago
- The AI Research Agent uses AI and web scraping to source, summarize, and cite information on any topic. It efficiently provides accurate…☆16Nov 11, 2024Updated last year
- Demonstration of how to run multiple chains in Langchain Assyncronously☆12Jul 6, 2023Updated 2 years ago
- A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.☆10Apr 6, 2021Updated 4 years ago
- ☆40May 22, 2023Updated 2 years ago
- Code and annotation for the paper "Towards Accurate and Interpretable Surgical Skill Assessment: A Video-Based Method Incorporating Recog…☆12Jan 20, 2023Updated 3 years ago
- Code for doing machine learning with various EHRs☆22Mar 1, 2023Updated 3 years ago
- ☆19Jul 7, 2025Updated 8 months ago