β20Sep 2, 2026Updated this week
Alternatives and similar repositories for biomedica-index
Users that are interested in biomedica-index are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [CVPR 2025] Custom Open CLIP repo to train biomedical CLIP modelsβ38Mar 23, 2025Updated last year
- [CVPR 2025] MicroVQA eval and π€RefineBot code for "MicroVQA: A Multimodal Reasoning Benchmark for Microscopy-Based Scientific Research"β¦β36Nov 25, 2025Updated 9 months ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel diβ¦β17Mar 3, 2023Updated 3 years ago
- β15May 24, 2025Updated last year
- MADELEINE: multi-stain slide representation learning (ECCV'24)β67Feb 18, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CirrMRI600+: Large Scale MRI Collection and Segmentation of Cirrhotic Liverβ24May 7, 2025Updated last year
- A registry of Knowledge Graphs, their data sources, and the ways they fit together.β27Updated this week
- Interactive Continual Semantic Segmentationβ12Apr 13, 2022Updated 4 years ago
- Python interface and preprocessing pipeline for the BBBC021 dataset of cellular imagesβ14Sep 19, 2021Updated 4 years ago
- MCP server for Open Targets dataβ19May 15, 2026Updated 3 months ago
- Neural Network architecture Visualization toolβ13Jul 4, 2020Updated 6 years ago
- Bad link reporter for GitHub repositoriesβ13Aug 3, 2026Updated last month
- β37Oct 10, 2025Updated 10 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024β116Oct 15, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Feather - Lightweight supervised slide foundation models (ICML 2025)β154Feb 5, 2026Updated 7 months ago
- HIPPO π¦ is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing oβ¦β20Jan 15, 2025Updated last year
- Integrating histology and spatial transcriptomics - NeurIPS 2024β436Apr 16, 2026Updated 4 months ago
- Framework for image and flow cytometry analysisβ33Mar 17, 2026Updated 5 months ago
- A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resourcesβ34Jul 28, 2026Updated last month
- Python library for validating and managing binary array linked data files, e.g. HDF, netCDF.β12Oct 14, 2022Updated 3 years ago
- Collation of metadata examples and notes for the projectβ12Apr 16, 2026Updated 4 months ago
- β31Feb 6, 2026Updated 7 months ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.β10Jul 25, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bash scripts to simplify your life (let's hope so!)β12Jul 21, 2025Updated last year
- Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instanceβ¦β21Feb 14, 2024Updated 2 years ago
- Access public biological ontologies.β14Aug 7, 2024Updated 2 years ago
- β13Aug 16, 2024Updated 2 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for aβ¦β12Jul 28, 2026Updated last month
- A Python interface to the Prolog pengines library. Makes it exceedingly easy to call out to SWI-Prolog within Python!β12Jun 26, 2020Updated 6 years ago
- A Co-evolving Agentic AI System for Medical Imaging Analysisβ117Updated this week
- PyTorch implementation of Retentive Network: A Successor to Transformer for Large Language Modelsβ14Jul 20, 2023Updated 3 years ago
- WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.β27Dec 16, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Interactive surface analysis in napari for bio-mechanical stress measurementβ18Aug 31, 2026Updated last week
- Screenshot plugin for Claude Codeβ16Dec 26, 2025Updated 8 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) claβ¦β68Nov 3, 2022Updated 3 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021β22Apr 28, 2021Updated 5 years ago
- TPTP python library and benchmarking serviceβ13Jul 20, 2026Updated last month
- SuperCell for Cytometry dataβ13Oct 14, 2025Updated 10 months ago
- β13Mar 29, 2019Updated 7 years ago