☆20Apr 8, 2025Updated last year
Alternatives and similar repositories for biomedica-index
Users that are interested in biomedica-index are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for our work "Systematic Evaluation of Large Vision-Language Models for Surgical Artificial Intelligence"☆20Jun 2, 2025Updated 11 months ago
- [CVPR 2025] Custom Open CLIP repo to train biomedical CLIP models☆37Mar 23, 2025Updated last year
- [CVPR 2025] MicroVQA eval and 🤖RefineBot code for "MicroVQA: A Multimodal Reasoning Benchmark for Microscopy-Based Scientific Research"…☆37Nov 25, 2025Updated 5 months ago
- [CVPR 2025] BIOMEDICA: An Open Biomedical Image-Caption Archive, Dataset, and Vision-Language Models Derived from Scientific Literature☆100Mar 22, 2025Updated last year
- CirrMRI600+: Large Scale MRI Collection and Segmentation of Cirrhotic Liver☆24May 7, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆17Mar 3, 2023Updated 3 years ago
- Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning☆12Nov 29, 2023Updated 2 years ago
- Interactive Continual Semantic Segmentation☆12Apr 13, 2022Updated 4 years ago
- Python interface and preprocessing pipeline for the BBBC021 dataset of cellular images☆14Sep 19, 2021Updated 4 years ago
- Histopathology Feature Extractors (2024)☆14Jun 14, 2024Updated last year
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆147Feb 5, 2026Updated 3 months ago
- Neural Network architecture Visualization tool☆13Jul 4, 2020Updated 5 years ago
- Tutorial to start working with Multiple Instance Learning☆14Jul 5, 2023Updated 2 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A framework for benchmarking embedding models in hybrid search scenarios (BM25 + vector search) using Weaviate.☆40Updated this week
- This is an official repo for the paper of "Are Vision Foundation Models Ready for Out-of-the-Box Medical Image Registration?"☆37Aug 14, 2025Updated 8 months ago
- Univariate guided lasso☆24Jan 22, 2026Updated 3 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆113Oct 15, 2024Updated last year
- Round Table Framework for TQA☆13Aug 27, 2024Updated last year
- [ICLR 2025] Video Action Differencing☆53Jul 3, 2025Updated 10 months ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated last year
- Python library for validating and managing binary array linked data files, e.g. HDF, netCDF.☆12Oct 14, 2022Updated 3 years ago
- HIPPO 🦛 is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing o…☆18Jan 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated last month
- vision language models finetuning notebooks & use cases (Medgemma - paligemma - florence .....)☆62Oct 7, 2025Updated 7 months ago
- Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint units☆14May 1, 2026Updated last week
- Demographic bias in misdiagnosis by computational pathology models - Nature Medicine☆14Apr 29, 2024Updated 2 years ago
- 🔍 Enable AI assistants to search and access ClinicalTrials.gov data through a simple MCP interface.☆16Apr 9, 2025Updated last year
- Code acompaning the paper titled "Mamba time series forecasting with uncertainty quantification"☆22Aug 8, 2025Updated 9 months ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆18Apr 10, 2026Updated 3 weeks ago
- 🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.☆23Mar 18, 2025Updated last year
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)☆21Mar 23, 2026Updated last month
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Apr 27, 2026Updated last week
- This streaming simulator workload continuously generates fake patient records and writes to Google Cloud FHIR Store.☆13May 25, 2022Updated 3 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 9 months ago
- some demo to show how to write imagepy plugin☆12Jun 25, 2020Updated 5 years ago