choderalab / automatic-equilibration-detectionLinks
Automatic detection of equilibrated regions of molecular simulations
☆17Updated 8 years ago
Alternatives and similar repositories for automatic-equilibration-detection
Users that are interested in automatic-equilibration-detection are comparing it to the libraries listed below
Sorting:
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Main code repository for FATSLiM☆21Updated 3 years ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 6 months ago
- Physical validation of molecular simulations☆56Updated last month
- Reads Gromacs EDR file to populate a pandas dataframe☆33Updated 6 months ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated 9 months ago
- Python bindings for TNG file format☆13Updated 6 months ago
- A Python toolkit for the analyis of lipid membrane simulations☆30Updated 2 months ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆29Updated 8 months ago
- Calculate position-dependent diffusivity functions from trajectory data (usually from molecular dynamics). The approach is described in h…☆11Updated 2 months ago
- Dihedral scanner with wavefront propagation☆34Updated last month
- A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD☆31Updated 10 months ago
- MDAnalysis wrapper around Packmol☆31Updated 2 years ago
- A comprehensive tool for analyzing liquid solvation structure.☆52Updated 10 months ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 3 years ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 9 months ago
- Best Practices article intended for LiveCoMS☆41Updated 5 years ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆46Updated 8 months ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Analyse Rotational Diffusion Tensor from MD Simulations☆18Updated 7 months ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆25Updated 4 years ago
- MDAnalysis home page mdanalysis.org as GitHub pages.☆15Updated 2 weeks ago
- This library tackles the construction and efficient execution of computational chemistry workflows☆47Updated last year
- ☆58Updated last month
- A class for conversion between zmatrices and cartesian coordinates☆33Updated 5 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- ☆11Updated 3 months ago
- Python version of the modified Seminario method code☆16Updated 4 years ago