shirtsgroup / physical_validation
Physical validation of molecular simulations
☆56Updated this week
Alternatives and similar repositories for physical_validation:
Users that are interested in physical_validation are comparing it to the libraries listed below
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆66Updated this week
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆63Updated 2 years ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆66Updated last year
- ☆58Updated this week
- A comprehensive toolkit for predicting free energies☆52Updated 3 months ago
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆68Updated this week
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆56Updated this week
- A project (and object) for storing, manipulating, and converting molecular mechanics data.☆74Updated this week
- RESP with inter- and intra-molecular constraints in Psi4.☆30Updated last year
- Package for consistent reporting of relative free energy results☆39Updated 2 weeks ago
- A fast solver for large scale MBAR/UWHAM equations☆38Updated 7 months ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆31Updated last year
- A comprehensive tool for analyzing liquid solvation structure.☆49Updated 8 months ago
- OpenMM plugin to interface with PLUMED☆66Updated last month
- Automatic MARTINI parametrization of small organic molecules☆66Updated 4 months ago
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆97Updated 9 months ago
- A python class for building a ZMatrix from a RDKit molecule. We can also do coordinate transformations between ZMatrix and Cartesian spac…☆14Updated last year
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- ☆64Updated last year
- Dihedral scanner with wavefront propagation☆33Updated last year
- Robust Equilibration Detection☆20Updated last month
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆28Updated 7 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated 11 months ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆31Updated 2 years ago
- Advanced toolkit for binding free energy calculations☆32Updated 3 months ago
- Experimental small molecule hydration free energy dataset☆30Updated 3 years ago
- Best Practices article intended for LiveCoMS☆39Updated 5 years ago
- Enable cheminformatics and quantum chemistry☆72Updated last year
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆31Updated 5 years ago