dmzuckerman / Sampling-UncertaintyLinks
Best Practices article intended for LiveCoMS
☆42Updated 5 years ago
Alternatives and similar repositories for Sampling-Uncertainty
Users that are interested in Sampling-Uncertainty are comparing it to the libraries listed below
Sorting:
- Fast PBC wrapping and unwrapping for VMD☆23Updated last year
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated last week
- A comprehensive tool for analyzing liquid solvation structure.☆54Updated last week
- An open source Python framework for transition interface and path sampling calculations.☆114Updated 6 months ago
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆117Updated 6 years ago
- Physical validation of molecular simulations☆57Updated last month
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆31Updated last year
- Automatic MARTINI parametrization of small organic molecules☆70Updated 6 months ago
- MDAnalysis wrapper around Packmol☆34Updated 2 years ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated last year
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 4 years ago
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- Reads Gromacs EDR file to populate a pandas dataframe☆33Updated last month
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆103Updated last year
- Main code repository for FATSLiM☆23Updated 3 years ago
- OpenMM plugin to interface with PLUMED☆71Updated last month
- Package for reading, analysis and visualization of metadynamics HILLS☆38Updated 2 years ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 4 years ago
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26Updated 4 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆71Updated last week
- Implementing OPLS-AA/M Force field in OpenMM from CHARMM formatted parameter files☆15Updated 10 years ago
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆44Updated 4 years ago
- OpenMM plugin to define forces with neural networks☆32Updated 5 years ago
- TUPÃ: Electric field analyses for molecular simulations☆23Updated 6 months ago
- LOOS: a lightweight object-oriented structure analysis library☆125Updated last month
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆47Updated last year
- ☆75Updated 11 months ago