Best Practices article intended for LiveCoMS
☆42Mar 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for Sampling-Uncertainty
Users that are interested in Sampling-Uncertainty are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python bindings for TNG file format☆13Oct 14, 2025Updated 5 months ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26May 12, 2021Updated 4 years ago
- Access to data for workshops and extended tests of MDAnalysis.☆19Apr 3, 2026Updated last week
- (outdated) fork of https://gitlab.com/gromacs/gromacs☆53Apr 27, 2023Updated 2 years ago
- Parallel algorithms for MDAnalysis☆31Aug 2, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Molecular kaleidoscope☆15Apr 11, 2018Updated 7 years ago
- persistent, pythonic trees for heterogeneous data☆33May 20, 2022Updated 3 years ago
- Reads Gromacs EDR file to populate a pandas dataframe☆33Oct 12, 2025Updated 5 months ago
- Main repository for METAGUI3☆20Jun 19, 2021Updated 4 years ago
- For discussing and aggregating data for force field development☆15Oct 19, 2016Updated 9 years ago
- the simple alchemistry test set☆10Nov 20, 2025Updated 4 months ago
- Calculate position-dependent diffusivity functions from trajectory data (usually from molecular dynamics). The approach is described in h…☆11Mar 25, 2025Updated last year
- User Guide for MDAnalysis☆30Apr 3, 2026Updated last week
- Main code repository for FATSLiM☆23Feb 13, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆118Dec 29, 2018Updated 7 years ago
- a logistics and persistence engine for the analysis of molecular dynamics trajectories☆30Jan 24, 2020Updated 6 years ago
- MDAnalysis wrapper around Packmol☆37May 1, 2023Updated 2 years ago
- Collective variables library for molecular simulation and analysis programs☆236Apr 2, 2026Updated last week
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Jun 30, 2025Updated 9 months ago
- Analysis of Molecular Dynamics output in the IPython Notebook☆10Jan 24, 2017Updated 9 years ago
- Parameter/topology editor and molecular simulator☆452Updated this week
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆81Sep 5, 2024Updated last year
- A generalized deep learning approach for local structure identification in molecular simulations. See https://doi.org/10.1039/C9SC02097G …☆17Jun 25, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆15Apr 7, 2022Updated 4 years ago
- An open tool implementing some recommended practices for analyzing alchemical free energy calculations☆136May 24, 2024Updated last year
- Prepare topology and coordinate file for CG models in Genesis.☆13Jul 3, 2025Updated 9 months ago
- Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.☆43May 8, 2024Updated last year
- Compare optimized geometries and energies from various force fields with respect to a QM reference.☆13Apr 19, 2021Updated 4 years ago
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- Visual Molecular Dynamics in Docker Container☆12Jan 1, 2015Updated 11 years ago
- a quick primer on making prettier (and more impactful) plots☆14Sep 27, 2015Updated 10 years ago
- Experimental small molecule hydration free energy dataset☆31Mar 29, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Automatic MARTINI parametrization of small organic molecules☆73May 28, 2025Updated 10 months ago
- A free energy command line tool using alchemlyb☆17Dec 11, 2022Updated 3 years ago
- ☆14Apr 1, 2026Updated last week
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- pKa estimates for proteins using an ensemble approach☆29Jul 11, 2025Updated 8 months ago
- Chemical perception tree automated exploration tool.☆20Aug 14, 2018Updated 7 years ago
- ☆11Mar 28, 2026Updated last week