A tiny package to compute the dynamics of stochastic and molecular simulations
☆33Jul 11, 2023Updated 3 years ago
Alternatives and similar repositories for tidynamics
Users that are interested in tidynamics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python bindings for TNG file format☆13Oct 14, 2025Updated 10 months ago
- persistent, pythonic trees for heterogeneous data☆33May 20, 2022Updated 4 years ago
- Computational Statistical Mechanics Tutorials☆15Nov 29, 2012Updated 13 years ago
- a logistics and persistence engine for the analysis of molecular dynamics trajectories☆30Jan 24, 2020Updated 6 years ago
- Program for robust fitting of bonded Molecular Mechanics parameters☆15Jun 30, 2015Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python package to compute and analyze transport properties.☆17Jul 27, 2025Updated last year
- ☆11Jul 18, 2022Updated 4 years ago
- Analysis of Molecular Dynamics output in the IPython Notebook☆10Jan 24, 2017Updated 9 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- Python implementation of the multistate Bennett acceptance ratio (MBAR)☆313Feb 12, 2026Updated 6 months ago
- the simple alchemistry test set☆10Nov 20, 2025Updated 8 months ago
- Molecular kaleidoscope☆15Apr 11, 2018Updated 8 years ago
- Generate 3D transition state geometries with GNNs☆13Oct 13, 2020Updated 5 years ago
- A comprehensive tool for analyzing liquid solvation structure.☆55Nov 26, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GROM is a GROMACS(mdp,itp,top) files with Syntax Highlighting and PDB Editor with visual cues in one package based on Qt5,PyQt5 and Pyth…☆11Nov 14, 2016Updated 9 years ago
- Accelerated sampling framework with autoencoder-based method☆23Sep 7, 2019Updated 6 years ago
- a quick primer on making prettier (and more impactful) plots☆14Sep 27, 2015Updated 10 years ago
- Access to data for workshops and extended tests of MDAnalysis.☆19Apr 3, 2026Updated 4 months ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Nov 11, 2021Updated 4 years ago
- Printing text using protein structures☆14Aug 9, 2021Updated 5 years ago
- User Guide for MDAnalysis☆31Updated this week
- A free energy command line tool using alchemlyb☆17Dec 11, 2022Updated 3 years ago
- UW CHEME 375 and applications in CHEME 310, 326. Chemical engineering scientific computing and numerical methods. Topics include curve fi…☆16Jun 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A conda-smithy repository for ambertools.☆12Jul 15, 2026Updated last month
- Reads Gromacs EDR file to populate a pandas dataframe☆34Oct 12, 2025Updated 10 months ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 8 years ago
- Unsupervised landmark analysis for jump detection in molecular dynamics simulations.☆13Jan 12, 2021Updated 5 years ago
- Analyse molecular dynamics simulations of solid-state ion transport by assigning mobile ions to discrete sites☆18Jun 2, 2026Updated 2 months ago
- An open library for the analysis of molecular dynamics trajectories☆728Aug 10, 2026Updated last week
- Package for consistent reporting of relative free energy results☆42Jul 23, 2026Updated 3 weeks ago
- Sparse Gaussian Process Potentials☆28May 8, 2026Updated 3 months ago
- Automatic detection of equilibrated regions of molecular simulations☆18Dec 24, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Molecular Dynamics in the Open☆90Aug 8, 2026Updated last week
- Differentiably evaluate energies using SMIRNOFF force fields☆20Aug 3, 2026Updated 2 weeks ago
- Cryptic pocket prediction using AlphaFold 2☆25Nov 27, 2022Updated 3 years ago
- Machine Learning Interatomic Potentials with the Atomic Cluster Expansion☆77Jul 29, 2026Updated 2 weeks ago
- A library that enables code interoperability via the MolSSI Driver Interface.☆35Jun 17, 2026Updated 2 months ago
- ☆13Jun 17, 2026Updated 2 months ago
- Main code repository for the PLUMED-GUI plugin for VMD☆17Jan 22, 2026Updated 6 months ago