Alternatives and similar repositories for vasculature:

Users that are interested in vasculature are comparing it to the libraries listed below

• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆65Updated 2 weeks ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆25Updated 2 weeks ago
• KMarshallX / VesselBoost
  ☆16Updated this week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆64Updated last week
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆26Updated last month
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆51Updated this week
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆48Updated this week
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆72Updated 2 months ago
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆29Updated 2 weeks ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 3 months ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆47Updated this week
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆72Updated 4 months ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• sammba-mri / sammba-mri
  small mammals brain MRI
  ☆16Updated last year
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆69Updated 8 months ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆105Updated 3 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆49Updated 8 months ago
• Diffusion-MRI / awesome-preclinical-diffusion-mri
  ☆17Updated last year
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆68Updated last month
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆45Updated 3 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆67Updated last year
• thalamicseg / thomas_new
  Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…
  ☆23Updated last month
• yu02019 / BEN
  ☆27Updated 10 months ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 4 months ago
• HumanBrainED / NHP-BrainExtraction
  ☆35Updated 3 years ago
• BBillot / hypothalamus_seg
  a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans
  ☆25Updated 2 years ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆94Updated last week
• ntustison / CrossLong
  Nature is a language---can't you read?
  ☆11Updated 3 years ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated last week
• nipreps / eddymotion
  Open-source eddy-current and head-motion correction for dMRI.
  ☆16Updated 2 months ago