gph82 / mdciaoLinks
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
☆33Updated 3 weeks ago
Alternatives and similar repositories for mdciao
Users that are interested in mdciao are comparing it to the libraries listed below
Sorting:
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- ☆43Updated 3 years ago
- ☆35Updated 8 months ago
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆39Updated this week
- Set up relative free energy calculations using a common scaffold☆23Updated last month
- ☆65Updated last year
- A python module to plot secondary structure schemes☆25Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆81Updated last month
- Analysis of non-covalent interactions in MD trajectories☆57Updated 5 months ago
- Computational Chemistry Workflows☆53Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 10 months ago
- The public versio☆54Updated last year
- A comprehensive toolkit for predicting free energies☆53Updated 4 months ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆49Updated 2 months ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- Package for consistent reporting of relative free energy results☆39Updated last month
- ☆28Updated 3 weeks ago
- Dynamic pharmacophore modeling of molecular interactions☆35Updated last year
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 5 years ago
- ☆54Updated 2 years ago
- ☆14Updated 5 months ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- A tool for setting up free energy simulations.☆36Updated 2 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆34Updated last year
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆69Updated last year
- Python code for generating Boresch restraints from MD simulations☆21Updated 2 years ago
- ☆34Updated last year
- Advanced toolkit for binding free energy calculations☆32Updated 5 months ago
- pKa estimates for proteins using an ensemble approach☆28Updated 7 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆63Updated 2 years ago