bio-phys / pydiffusionLinks
Analyse Rotational Diffusion Tensor from MD Simulations
☆21Updated last year
Alternatives and similar repositories for pydiffusion
Users that are interested in pydiffusion are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for analyzing liquid solvation structure.☆54Updated 3 months ago
- MDAnalysis wrapper around Packmol☆33Updated 2 years ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆46Updated last year
- MLP training for molecular systems☆54Updated last month
- a tool for creating Molecular Dynamics-ready models of polymeric systems☆22Updated 6 years ago
- Automated calculation of cavity in molecular cages☆23Updated 7 months ago
- An open source Python framework for transition interface and path sampling calculations.☆115Updated 4 months ago
- ☆62Updated 3 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- Implementation of corrections for diffusion coefficients in membrane simulations.☆10Updated 3 years ago
- Development of High-Throughput Polymer Network Atomistic Simulation☆25Updated 11 months ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Generates Martini models for open carbon nanotubes to use with Gromacs.☆15Updated 3 years ago
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆91Updated last week
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆20Updated last year
- Physical validation of molecular simulations☆57Updated 3 weeks ago
- Interactive Jupyter Notebooks for learning the fundamentals of Density-Functional Theory (DFT)☆77Updated last month
- Enhanced sampling methods for molecular dynamics simulations☆39Updated 2 years ago
- Program for revealing non-covalent interactions☆34Updated 3 years ago
- code for single-ended and double-ended molecular GSM☆63Updated last week
- Machine learning exercises for the MolSim course (http://www.acmm.nl/molsim/molsim2023/index.html)☆28Updated last year
- Quick Reaction Coordinate using Python☆39Updated last year
- a python package for the interfacial analysis of molecular simulations☆93Updated this week
- A package of tools for automating the file preparation for the LAMMPS fix bond/react.☆22Updated 3 years ago
- tmQM dataset files☆56Updated 7 months ago
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆101Updated last year
- Automated workflow for generating quantum chemistry calculation of explicitly solvated molecules☆54Updated last month
- OpenMM plugin for simulating electrochemical systems☆21Updated last year
- Fast PBC wrapping and unwrapping for VMD☆23Updated 11 months ago