andrealoddo / MP-IDB-The-Malaria-Parasite-Image-Database-for-Image-Processing-and-Analysis
MP-IDB is the public image dataset described in the following article: https://link.springer.com/chapter/10.1007/978-3-030-13835-6_7
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for MP-IDB-The-Malaria-Parasite-Image-Database-for-Image-Processing-and-Analysis
- StarDist PyTorch☆41Updated 2 years ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆19Updated 4 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆76Updated this week
- ☆28Updated 3 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆24Updated 4 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 3 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆18Updated last year
- This repository contains an implementation of a deep learning Mask R-CNN algorithm for nuclei segmentation from whole slide images of tis…☆17Updated 5 years ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆21Updated last year
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆125Updated 3 weeks ago
- Codebase for "A Foundation Model for Cell Segmentation"☆55Updated 3 months ago
- This repository is an attempt to list all malaria parasite imaging datasets (blood smears). Contributions welcome!☆56Updated 4 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆46Updated 2 years ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆52Updated 5 months ago
- HistoSeg is an Encoder-Decoder DCNN which utilizes the novel Quick Attention Modules and Multi Loss function to generate segmentation mas…☆22Updated 3 weeks ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- WBCAtt: A White Blood Cell Dataset Annotated with Detailed Morphological Attributes (NeurIPS 2023)☆16Updated 7 months ago
- Core components of PathologyGo, the AI assistance system designed for histopathological inference.☆15Updated 4 years ago
- Nuclei segmentation and classification (Cancer cells)☆22Updated 5 months ago
- Re-stained whole slide image alignment☆31Updated last year
- 3 different deep learning approaches to segment nuclei and identify associated markers☆8Updated 2 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆29Updated last year
- Interactive Segmentation of Nucleus☆61Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆22Updated 3 weeks ago
- QuPath extension for Segment Anything Model (SAM)☆92Updated 2 months ago
- Open source Python library for building bioimage analysis pipelines☆126Updated last week
- ☆35Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago