alchemistry / flamelLinks
A free energy command line tool using alchemlyb
☆16Updated 3 years ago
Alternatives and similar repositories for flamel
Users that are interested in flamel are comparing it to the libraries listed below
Sorting:
- ☆31Updated 2 weeks ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 3 years ago
- ☆21Updated last month
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 5 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆75Updated 2 years ago
- ☆28Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 8 months ago
- Set up relative free energy calculations using a common scaffold☆24Updated 5 months ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 3 years ago
- ☆16Updated 9 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆40Updated 2 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 11 years ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆35Updated 2 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 4 months ago
- the simple alchemistry test set☆10Updated 2 months ago
- Density based object completion over PBC.☆30Updated last year
- ☆44Updated last year
- ☆15Updated last year
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆28Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆43Updated 2 months ago
- User Guide for MDAnalysis☆29Updated last week
- Advanced toolkit for binding free energy calculations☆34Updated 5 months ago
- ☆65Updated 6 months ago
- Package for consistent reporting of relative free energy results☆41Updated 2 weeks ago
- The peleffy (PELE Force Field Yielder) is a Python package that builds PELE-compatible force field templates.☆12Updated last month
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆16Updated 2 weeks ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆34Updated 2 years ago
- ☆25Updated 2 years ago