qusers / Q6Links
Q6 Repository -- EVB, FEP and LIE simulator.
☆35Updated 2 years ago
Alternatives and similar repositories for Q6
Users that are interested in Q6 are comparing it to the libraries listed below
Sorting:
- Analysis of non-covalent interactions in MD trajectories☆64Updated 10 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆61Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Package for consistent reporting of relative free energy results☆40Updated this week
- Python code for generating Boresch restraints from MD simulations☆22Updated last month
- Random Acceleration Molecular Dynamics in GROMACS☆40Updated last year
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 4 months ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 5 months ago
- ☆65Updated 3 months ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- ☆39Updated last year
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- ☆30Updated this week
- Solvation Structure and Thermodynamic Mapping☆40Updated last year
- OpenMM plugin to interface with PLUMED☆70Updated last week
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆88Updated 3 months ago
- Advanced toolkit for binding free energy calculations☆33Updated 2 months ago
- ☆28Updated 6 months ago
- ☆28Updated last year
- This package contains tools for setting up hybrid-topology FE calculations☆32Updated last month
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆45Updated 4 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- User Guide for MDAnalysis☆29Updated this week
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆57Updated 7 months ago