qusers / Q6Links
Q6 Repository -- EVB, FEP and LIE simulator.
☆31Updated last year
Alternatives and similar repositories for Q6
Users that are interested in Q6 are comparing it to the libraries listed below
Sorting:
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 5 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- Advanced toolkit for binding free energy calculations☆32Updated last week
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- ☆27Updated last year
- Analysis of non-covalent interactions in MD trajectories☆58Updated 5 months ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- ☆36Updated 9 months ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- A tool for setting up free energy simulations.☆35Updated 2 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆39Updated this week
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆18Updated 2 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆31Updated 2 years ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆34Updated last month
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆29Updated last year
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆46Updated 4 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- Density based object completion over PBC.☆30Updated 6 months ago
- Stable version of MCCE.☆10Updated 8 months ago
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- A collections of scripts for working molecular dynamics simulations☆43Updated last year
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- User Guide for MDAnalysis☆25Updated last month
- Python code for generating Boresch restraints from MD simulations☆22Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 11 months ago
- ☆28Updated last month
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Yasara plugins for Gromacs users☆27Updated last year