qusers / Q6Links
Q6 Repository -- EVB, FEP and LIE simulator.
☆34Updated last year
Alternatives and similar repositories for Q6
Users that are interested in Q6 are comparing it to the libraries listed below
Sorting:
- Analysis of non-covalent interactions in MD trajectories☆63Updated 9 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated 2 years ago
- ☆30Updated last month
- ☆39Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- Set up relative free energy calculations using a common scaffold☆24Updated last month
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆33Updated 3 months ago
- Package for consistent reporting of relative free energy results☆39Updated last week
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆39Updated last year
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- ☆65Updated 2 months ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 3 years ago
- User Guide for MDAnalysis☆27Updated last week
- Calculation of water/solvent partition coefficients with Gromacs.☆28Updated 11 months ago
- Advanced toolkit for binding free energy calculations☆33Updated last month
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- OpenMM plugin to interface with PLUMED☆68Updated 7 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆30Updated 3 years ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆23Updated last year
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 4 months ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- A collections of scripts for working molecular dynamics simulations☆44Updated 2 months ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago