MDAnalysis / UserGuideLinks
User Guide for MDAnalysis
☆28Updated this week
Alternatives and similar repositories for UserGuide
Users that are interested in UserGuide are comparing it to the libraries listed below
Sorting:
- Q6 Repository -- EVB, FEP and LIE simulator.☆34Updated last year
- Package for consistent reporting of relative free energy results☆39Updated last month
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- Advanced toolkit for binding free energy calculations☆32Updated last month
- Set up relative free energy calculations using a common scaffold☆24Updated 3 months ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆33Updated last month
- Examples of applications of pymbar to various problems in simulation and experiment☆22Updated 10 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 2 years ago
- ☆65Updated last week
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated 2 weeks ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- The MDAnalysis Toolkits Registry☆18Updated last week
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 2 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- ☆37Updated 10 months ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 6 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated last week
- ☆29Updated 3 weeks ago
- Robust Equilibration Detection☆23Updated 3 months ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- A python class for building a ZMatrix from a RDKit molecule. We can also do coordinate transformations between ZMatrix and Cartesian spac…☆14Updated 2 years ago
- Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling☆41Updated 2 years ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆75Updated 2 weeks ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- ☆11Updated 5 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated last month
- Solvation Structure and Thermodynamic Mapping☆40Updated last year