DemetersSon83 / Mesa-SIRView external linksLinks
A Mesa-based ABM library for epidemiological (SIR) modeling.
☆13Apr 2, 2020Updated 5 years ago
Alternatives and similar repositories for Mesa-SIR
Users that are interested in Mesa-SIR are comparing it to the libraries listed below
Sorting:
- Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.☆41Jun 22, 2022Updated 3 years ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 10 months ago
- ☆16Aug 17, 2023Updated 2 years ago
- A simple Python/Mesa model of COVID-19 contagion and possible measures☆30Aug 14, 2023Updated 2 years ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆13Feb 4, 2026Updated last week
- scripts and notes for learning☆41Jun 4, 2024Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 6 months ago
- ☆10Jan 24, 2022Updated 4 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Crixus is a preprocessing tool for SPH, in particular Spartacus3D, Sphynx and GPUSPH.☆11Mar 18, 2016Updated 9 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 2 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated last week
- Postprocessing gadgets for output generated by RevBayes☆14Feb 6, 2026Updated last week
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 5 months ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Jan 29, 2026Updated 2 weeks ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager☆10Mar 19, 2024Updated last year
- computational training at Fred Hutch☆12Jun 11, 2021Updated 4 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 3 years ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Alwaysnote is an Evernote clone using vuejs, tailwind css, and FastAPI☆14Jan 4, 2023Updated 3 years ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 4 months ago
- Android app that tracks tremors and recommends follow up action☆12Sep 17, 2017Updated 8 years ago
- ☆12Jun 19, 2018Updated 7 years ago
- Design data and process for the AdaptyvBio protein design competition☆10Dec 11, 2024Updated last year
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- Xiangyun's personal website☆11Feb 10, 2026Updated last week
- EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.☆16Apr 4, 2025Updated 10 months ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Agent-based modeling 2D wildfire suppression simulator tool built on the mesa framework in Python☆11Nov 20, 2020Updated 5 years ago
- EPIC: a large collection of over 30 million epidemic-related tweets☆12Jul 28, 2020Updated 5 years ago