Alternatives and similar repositories for deepFCD

Users that are interested in deepFCD are comparing it to the libraries listed below

• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆158Updated last week
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆106Updated this week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆169Updated this week
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆99Updated 9 months ago
• nipreps / eddymotion
  Open-source eddy-current and head-motion correction for dMRI.
  ☆19Updated 10 months ago
• wwu-mmll / deepmriprep
  Neural network-based MRI preprocessing: Prep 🧠 images in seconds 🔥
  ☆43Updated 2 weeks ago
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆38Updated 2 weeks ago
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆167Updated last week
• razvanmarinescu / brain-coloring
  BrainPainter - Brain Visualisation Software
  ☆70Updated 2 years ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆73Updated last week
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated last month
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆71Updated last month
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆47Updated 4 years ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆130Updated last year
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆50Updated last year
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆104Updated last month
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆121Updated this week
• SCAN-NRAD / DL-DiReCT
  DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation
  ☆28Updated 7 months ago
• nipreps / nibabies
  fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
  ☆36Updated last month
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆112Updated last year
• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆341Updated 3 weeks ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆43Updated 2 months ago
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆270Updated 3 weeks ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆83Updated this week
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• MICA-MNI / micapipe
  micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…
  ☆114Updated this week
• TaoZhong11 / nBEST
  An accurate, adaptable, and automated AI pipeline called non-human primates Brain Extraction and Segmentation Toolbox (nBEST) for process…
  ☆23Updated last year
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆190Updated last week